Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   KSK55_RS09335 Genome accession   NZ_CP077107
Coordinates   1950148..1951989 (-) Length   613 a.a.
NCBI ID   WP_214419922.1    Uniprot ID   -
Organism   Methanospirillum purgamenti strain GP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945148..1956989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSK55_RS09320 (KSK55_09320) - 1946195..1948225 (+) 2031 WP_218606711.1 CHASE4 domain-containing protein -
  KSK55_RS09325 (KSK55_09325) epdK 1948231..1949223 (-) 993 WP_218606712.1 type II secretion system F family protein Machinery gene
  KSK55_RS09330 (KSK55_09330) epdJ 1949226..1950161 (-) 936 WP_218606713.1 type II secretion system F family protein Machinery gene
  KSK55_RS09335 (KSK55_09335) epdL 1950148..1951989 (-) 1842 WP_214419922.1 type II/IV secretion system ATPase subunit Machinery gene
  KSK55_RS09340 (KSK55_09340) - 1952162..1952785 (+) 624 WP_214419921.1 RAD55 family ATPase -
  KSK55_RS09345 (KSK55_09345) - 1952788..1953204 (-) 417 WP_218608977.1 hypothetical protein -
  KSK55_RS09350 (KSK55_09350) - 1953168..1953704 (-) 537 WP_218606714.1 aldolase -
  KSK55_RS09355 (KSK55_09355) npdG 1953712..1954362 (-) 651 WP_218606715.1 NADPH-dependent F420 reductase -
  KSK55_RS09360 (KSK55_09360) - 1954364..1954636 (-) 273 WP_214419917.1 thioredoxin family protein -
  KSK55_RS09365 (KSK55_09365) - 1954689..1956143 (-) 1455 WP_218606716.1 preprotein translocase subunit SecD -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 69323.07 Da        Isoelectric Point: 6.9785

>NTDB_id=579387 KSK55_RS09335 WP_214419922.1 1950148..1951989(-) (epdL) [Methanospirillum purgamenti strain GP1]
MKVKVGSFKKQVRASNDKGKPAGEPSLQDTPPKEKVSRLSALSGKKKEKTGKTNKPASLRRLGKKDEKDQSVSGTGSGES
KKKGSLFGTIGKIAPLAKKREQYDPKVHGMMVDLTYVPPPGTEEIEVYPVNPPFAYIRITYNYTTHEYLYEVVEPVYSEA
EKKLLDELKKGIFERVNVNTRQISRETAGETLESMMNEVLADYAINLDPLTYEKIHYHLKKDFLGDGLVDPVMHDRFIED
ISCDGIGRPLFVYHSRYESIESNLFYSDNPELDSFVTKLAQRAGKHISVADPMLDATMQDGSRIQMTLGTEVTAHGSTFT
IRKFKDEPITPTDLIEWGTFSPLSIAFLWLAVENGKSCIFAGGTASGKTTSLNAISLFIPPLAKIVTLEDTRELKLPHAN
WIPSVTRESFDVSGKGEIDMYELLKAALRQRPEYLIVGEVRGREALTLFQAMSTGHVTYSTMHADSVSSAVHRLENPPIS
VPRNMLSALNLVCVQVQARVGGQRIRRNKQIIEVLDIDPRTNELITNEVFRWRQATDEISYSGKSFILEEIMESHGWDEE
RIRRDLLQRQEVLEWMREQKIRDFRDVSKIVVSYFRDSETLMEQIRSGGNEFL

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=579387 KSK55_RS09335 WP_214419922.1 1950148..1951989(-) (epdL) [Methanospirillum purgamenti strain GP1]
ATGAAAGTAAAGGTGGGGAGTTTTAAAAAACAGGTTCGTGCATCGAATGATAAGGGAAAACCTGCCGGAGAGCCATCTTT
ACAAGATACTCCACCTAAGGAAAAAGTTTCCCGACTGTCTGCCCTGTCTGGCAAAAAGAAAGAAAAAACTGGAAAAACCA
ATAAACCAGCAAGTTTACGCCGGCTTGGGAAGAAGGATGAAAAAGATCAGTCCGTTTCTGGTACAGGATCTGGGGAATCG
AAAAAGAAGGGTTCACTATTTGGAACAATTGGAAAAATAGCACCTCTGGCAAAAAAACGTGAGCAATATGATCCCAAGGT
CCATGGGATGATGGTTGACCTCACGTATGTGCCTCCTCCCGGGACTGAAGAGATAGAGGTCTATCCGGTTAATCCTCCTT
TTGCATATATCCGGATTACGTACAACTATACCACGCATGAGTACCTGTACGAAGTTGTTGAACCGGTATATTCAGAAGCA
GAAAAGAAGCTTCTCGATGAGCTTAAAAAAGGAATATTTGAACGGGTGAATGTAAACACCCGACAGATTTCACGTGAGAC
TGCGGGGGAGACTCTTGAGTCCATGATGAATGAGGTGCTGGCAGATTATGCAATCAACCTGGACCCTCTGACCTATGAGA
AGATCCATTATCACCTGAAAAAAGACTTTCTTGGGGATGGACTTGTTGATCCGGTGATGCATGATCGGTTTATTGAAGAT
ATCTCCTGTGACGGTATCGGCAGACCTCTTTTTGTATATCATTCGAGATACGAATCAATAGAGTCTAATCTCTTCTATTC
TGATAATCCAGAACTTGATTCGTTTGTCACTAAGCTTGCTCAGCGTGCCGGAAAACACATCTCAGTTGCAGATCCGATGC
TGGATGCAACAATGCAGGATGGATCCCGTATTCAGATGACACTCGGGACCGAAGTAACAGCACATGGGTCTACTTTTACC
ATCCGGAAATTCAAAGATGAACCGATCACCCCGACTGACCTGATCGAATGGGGTACCTTTTCTCCTCTCTCGATAGCATT
CCTCTGGCTTGCTGTTGAAAACGGGAAGTCATGCATCTTTGCCGGTGGGACAGCGTCAGGAAAGACAACCTCACTGAATG
CTATCTCCCTATTTATTCCACCCTTGGCAAAGATAGTCACACTTGAGGATACCAGGGAACTGAAGCTTCCCCATGCCAAT
TGGATTCCAAGTGTCACCCGTGAGTCCTTTGATGTGAGCGGTAAAGGGGAGATTGATATGTATGAACTCTTAAAAGCTGC
TCTTCGTCAGCGTCCTGAGTACCTGATTGTTGGAGAAGTCCGTGGTCGTGAAGCACTCACTCTCTTTCAGGCGATGTCAA
CCGGGCATGTGACGTATTCCACAATGCACGCGGATTCAGTATCCTCAGCAGTCCATCGTCTGGAAAATCCTCCCATCTCA
GTTCCAAGAAACATGCTTTCTGCCTTAAACCTGGTTTGTGTGCAGGTCCAGGCACGGGTCGGCGGTCAGCGCATCCGGCG
TAACAAACAGATTATCGAGGTCCTGGATATTGATCCCAGAACCAATGAACTGATCACAAATGAAGTATTCAGATGGAGGC
AGGCAACCGATGAGATCTCATACTCTGGCAAGTCGTTTATTCTGGAAGAGATCATGGAGTCACATGGGTGGGATGAGGAA
AGAATTCGTCGTGATCTTCTCCAGCGGCAGGAAGTACTTGAGTGGATGCGTGAACAGAAAATCCGCGACTTTCGTGATGT
GAGCAAAATTGTTGTCTCGTACTTCAGGGATTCCGAGACCTTAATGGAACAGATCCGGTCTGGTGGCAATGAATTCTTAT
GA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(238-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

71.893

85.318

0.613