Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   KSK55_RS09325 Genome accession   NZ_CP077107
Coordinates   1948231..1949223 (-) Length   330 a.a.
NCBI ID   WP_218606712.1    Uniprot ID   -
Organism   Methanospirillum purgamenti strain GP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1943231..1954223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSK55_RS09310 (KSK55_09310) - 1943744..1944286 (+) 543 WP_256663970.1 acylphosphatase -
  KSK55_RS09315 (KSK55_09315) - 1944586..1946043 (+) 1458 WP_214419926.1 response regulator -
  KSK55_RS09320 (KSK55_09320) - 1946195..1948225 (+) 2031 WP_218606711.1 CHASE4 domain-containing protein -
  KSK55_RS09325 (KSK55_09325) epdK 1948231..1949223 (-) 993 WP_218606712.1 type II secretion system F family protein Machinery gene
  KSK55_RS09330 (KSK55_09330) epdJ 1949226..1950161 (-) 936 WP_218606713.1 type II secretion system F family protein Machinery gene
  KSK55_RS09335 (KSK55_09335) epdL 1950148..1951989 (-) 1842 WP_214419922.1 type II/IV secretion system ATPase subunit Machinery gene
  KSK55_RS09340 (KSK55_09340) - 1952162..1952785 (+) 624 WP_214419921.1 RAD55 family ATPase -
  KSK55_RS09345 (KSK55_09345) - 1952788..1953204 (-) 417 WP_218608977.1 hypothetical protein -
  KSK55_RS09350 (KSK55_09350) - 1953168..1953704 (-) 537 WP_218606714.1 aldolase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36313.53 Da        Isoelectric Point: 7.0760

>NTDB_id=579385 KSK55_RS09325 WP_218606712.1 1948231..1949223(-) (epdK) [Methanospirillum purgamenti strain GP1]
MGLFGDRKKEKISVDPKSEEIYSKIETYYHYSEGTLRFIKHPFRTLFEKPINILYVSVPAGLLFFIVGLTMALQNGGPGA
LLTNSFIDDVAVFTTVIIVGPLAVTDLLEGRRITSIEIALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTRHIRQLD
QRISWNFAFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVIMKTDRKNNMFIYVIIILASFAV
FLFVVMILVSSFLKTMADLGAETGASGQAGFNLGGFDLALYIRVFSHAGMFQGFFSGLVAGVMGEGRVTAGLKYSVLMLL
IAWVTFRFMV

Nucleotide


Download         Length: 993 bp        

>NTDB_id=579385 KSK55_RS09325 WP_218606712.1 1948231..1949223(-) (epdK) [Methanospirillum purgamenti strain GP1]
ATGGGACTATTTGGGGACCGGAAAAAAGAAAAAATCTCGGTTGATCCGAAGAGTGAAGAGATTTATTCAAAAATTGAAAC
GTACTACCACTACTCCGAGGGCACACTCCGGTTTATCAAACACCCGTTCCGGACCCTGTTTGAAAAACCGATCAATATTC
TCTATGTGTCAGTCCCGGCAGGCCTTCTCTTTTTTATTGTCGGACTCACGATGGCCCTTCAGAATGGAGGTCCTGGAGCC
CTTCTGACAAATTCGTTCATAGATGATGTAGCAGTATTTACAACGGTTATCATCGTCGGACCCCTGGCGGTAACTGATCT
TCTTGAAGGAAGACGAATCACGAGTATCGAGATTGCGCTTCCCAACTTTTTTCGGGATCTGGCTGGTATGCACGAAAGTG
GTATGACCTTGCCTGGTGCTATTCACCTGGTATCTCAGGCTGAGTATGGTGCTCTCACCCGGCATATCCGCCAGCTTGAT
CAGCGCATATCATGGAACTTTGCATTCATTGATGCCATACGCCAGCTTGGAAAAGAGATCCCGATCCCTCTTGTGGAACG
GAGTGTGGATCTTGTAGCGCGTGCGAGTGATGCCGGTGGTGATATCGTTGAGGTTCTGCGTGCAGCCGGGAAGGACTCAG
CAGAATATGTGATCATGAAGACTGACCGGAAGAACAACATGTTCATCTATGTCATCATCATCCTTGCATCATTTGCAGTG
TTCCTCTTTGTAGTCATGATCCTGGTTTCATCGTTCCTGAAGACCATGGCCGATCTTGGAGCAGAAACGGGGGCATCTGG
TCAGGCAGGATTTAACCTGGGAGGGTTTGACCTGGCTCTCTATATACGCGTCTTCTCTCATGCCGGTATGTTCCAGGGAT
TTTTCTCAGGGCTTGTTGCCGGTGTCATGGGTGAAGGGCGTGTTACAGCAGGGCTGAAATATTCAGTTCTGATGCTCCTT
ATCGCCTGGGTTACATTCAGGTTTATGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(123-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

55.161

93.939

0.518