Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   KSK55_RS09330 Genome accession   NZ_CP077107
Coordinates   1949226..1950161 (-) Length   311 a.a.
NCBI ID   WP_218606713.1    Uniprot ID   -
Organism   Methanospirillum purgamenti strain GP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944226..1955161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSK55_RS09315 (KSK55_09315) - 1944586..1946043 (+) 1458 WP_214419926.1 response regulator -
  KSK55_RS09320 (KSK55_09320) - 1946195..1948225 (+) 2031 WP_218606711.1 CHASE4 domain-containing protein -
  KSK55_RS09325 (KSK55_09325) epdK 1948231..1949223 (-) 993 WP_218606712.1 type II secretion system F family protein Machinery gene
  KSK55_RS09330 (KSK55_09330) epdJ 1949226..1950161 (-) 936 WP_218606713.1 type II secretion system F family protein Machinery gene
  KSK55_RS09335 (KSK55_09335) epdL 1950148..1951989 (-) 1842 WP_214419922.1 type II/IV secretion system ATPase subunit Machinery gene
  KSK55_RS09340 (KSK55_09340) - 1952162..1952785 (+) 624 WP_214419921.1 RAD55 family ATPase -
  KSK55_RS09345 (KSK55_09345) - 1952788..1953204 (-) 417 WP_218608977.1 hypothetical protein -
  KSK55_RS09350 (KSK55_09350) - 1953168..1953704 (-) 537 WP_218606714.1 aldolase -
  KSK55_RS09355 (KSK55_09355) npdG 1953712..1954362 (-) 651 WP_218606715.1 NADPH-dependent F420 reductase -
  KSK55_RS09360 (KSK55_09360) - 1954364..1954636 (-) 273 WP_214419917.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34334.12 Da        Isoelectric Point: 5.0663

>NTDB_id=579386 KSK55_RS09330 WP_218606713.1 1949226..1950161(-) (epdJ) [Methanospirillum purgamenti strain GP1]
MNSYERFCFSLLGSRMSGKREKYYELIENLKSARMGITFEAYLSTAVFTSVLVGIIGSILIALLVYLLNVPALISFRGNV
PTDIAATINQFQGYYLMVGTLIAGIVSFVVLYGTTFLIYLVYPSVVAGGRRRNIETTLPYAINYLAAMSTAGIPPAEVFR
QLGNSTIYGESSVEARYIILEVDVFGHDLIEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDFFRTKAEQYTGENRQT
QKQFLDTLALIAESYVTALVAGTLFMILIQSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLIDSMTPEW

Nucleotide


Download         Length: 936 bp        

>NTDB_id=579386 KSK55_RS09330 WP_218606713.1 1949226..1950161(-) (epdJ) [Methanospirillum purgamenti strain GP1]
ATGAATTCTTATGAGCGGTTCTGCTTCTCCCTGCTTGGAAGCCGGATGTCAGGCAAACGGGAGAAATACTATGAACTCAT
TGAGAATCTCAAGTCTGCCAGAATGGGTATTACCTTTGAAGCATACCTTTCTACTGCTGTATTCACCTCTGTTCTTGTCG
GAATTATTGGCTCAATCCTGATTGCCCTTCTTGTGTACCTCCTGAACGTCCCGGCACTGATATCTTTTCGGGGTAATGTT
CCCACGGATATTGCAGCGACTATCAACCAGTTCCAGGGATACTACCTCATGGTGGGGACACTTATTGCTGGCATCGTCTC
TTTTGTGGTGCTGTATGGGACGACATTTCTCATCTATCTGGTTTATCCTTCTGTAGTTGCTGGGGGAAGAAGACGCAATA
TCGAGACAACCCTTCCATATGCTATCAACTATCTTGCTGCAATGTCTACCGCAGGCATCCCTCCGGCAGAGGTTTTCCGG
CAACTGGGGAACTCGACGATATATGGTGAGTCTTCGGTTGAAGCTCGGTATATCATCCTTGAGGTGGATGTGTTTGGGCA
TGATCTTATCGAAGCATTGAAAAATGTCTCCATGAGTACACCAAGTCCGCGTATGCGTGACTTTCTCCAGGGGTGTATCG
GAAGTGTTGCAGCGGGAAGCAACATCTCTGATTTTTTCAGGACAAAAGCAGAACAGTATACCGGCGAAAACAGGCAGACA
CAGAAACAATTTCTTGATACCCTCGCACTGATAGCCGAGAGTTATGTAACCGCTCTTGTTGCCGGAACTCTGTTCATGAT
TCTTATTCAGTCTATCATGGCTATTCTGTCTGGAGAATCAACACCCTTGTTTCTGTATATTATCATCTATCTGATCATTC
CGTTTGGAAGTGTGATGTTTGTGGTTCTGATAGATTCGATGACGCCGGAGTGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(142-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

60.323

99.678

0.601