Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HU763_RS07600 Genome accession   NZ_CP077097
Coordinates   1628554..1630767 (+) Length   737 a.a.
NCBI ID   WP_186689092.1    Uniprot ID   -
Organism   Pseudomonas anuradhapurensis strain RD8MR3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623554..1635767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU763_RS07580 (HU763_007580) - 1625424..1626047 (+) 624 WP_186680580.1 glutathione S-transferase -
  HU763_RS07585 (HU763_007585) - 1626193..1627125 (+) 933 WP_186689086.1 ABC transporter ATP-binding protein -
  HU763_RS07590 (HU763_007590) - 1627122..1627901 (+) 780 WP_186680575.1 ABC transporter permease -
  HU763_RS07595 (HU763_007595) - 1627785..1628411 (-) 627 WP_186689089.1 DUF2062 domain-containing protein -
  HU763_RS07600 (HU763_007600) comA 1628554..1630767 (+) 2214 WP_186689092.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU763_RS07605 (HU763_007605) exbB 1631224..1631859 (+) 636 WP_170028901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU763_RS07610 (HU763_007610) - 1631856..1632290 (+) 435 WP_170028902.1 ExbD/TolR family protein -
  HU763_RS07615 (HU763_007615) lpxK 1632290..1633291 (+) 1002 WP_186689094.1 tetraacyldisaccharide 4'-kinase -
  HU763_RS07620 (HU763_007620) - 1633335..1633520 (+) 186 WP_003247142.1 Trm112 family protein -
  HU763_RS07625 (HU763_007625) kdsB 1633517..1634281 (+) 765 WP_186689096.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU763_RS07630 (HU763_007630) - 1634281..1634745 (+) 465 WP_186680300.1 low molecular weight protein-tyrosine-phosphatase -
  HU763_RS07635 (HU763_007635) murB 1634742..1635761 (+) 1020 WP_170028906.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79522.35 Da        Isoelectric Point: 11.0585

>NTDB_id=579212 HU763_RS07600 WP_186689092.1 1628554..1630767(+) (comA) [Pseudomonas anuradhapurensis strain RD8MR3]
MRTGMFALALGLLCLGFFPALPSVGWLVLLAVGAGVCLFTRLWPLGCFLLGLCWALGSAQLALDDRLAPGLEGRTLWLEG
RVVGLPTRTAQGVRFELQEARSRRADLPQRLQLSWFDGPALRAGEQWRLAVTLQRPAGLLNPHGPDLEAQLLARRIGATG
SVKAGQLLAPVAGGWRDRLRQRLLAVDAHGRQAALVALVLGDGTGLARHDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLIEPL
AVLLPGFWLSFAAVATLVYCFSARLGGWRPWQAWTRAQWGIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWLPPALPWWAWLLVCLGTWLLLLPRGVPLRGLGGVMLLALW
VPRATVPFGQVEVWQLDVGQGLAVLLRTRHHDLLYDAGPARGDTDLGERVVLPTLRKLGVRRLDLLLVSHAHADHAGGAA
AIARGLPVRRAIGGEALQDLQLQPCASGEQWAWDGVHFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAEQAWL
AATDTPRIDWLQAPHHGSRSSSTEAFIRATAPRGVLVSRGRNNSFGHPHAQVVERYRRHGVMVHDTAVEGALRLVLGRHG
AVESVREQRRFWRDSAQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=579212 HU763_RS07600 WP_186689092.1 1628554..1630767(+) (comA) [Pseudomonas anuradhapurensis strain RD8MR3]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCTGGGCTTTTTCCCCGCGTTGCCGTCGGTCGGATGGCT
GGTGCTACTGGCCGTTGGCGCTGGCGTCTGCCTGTTCACCCGCTTGTGGCCGCTGGGTTGCTTCCTGCTGGGCCTGTGCT
GGGCGCTTGGCTCGGCGCAGCTGGCTTTGGATGACCGCCTGGCGCCCGGGCTGGAAGGCCGTACCCTGTGGCTGGAGGGT
CGGGTGGTCGGCCTGCCGACCCGCACCGCGCAAGGGGTGCGCTTCGAGCTGCAAGAGGCCCGTTCGCGGCGCGCCGATCT
GCCGCAGCGCCTGCAGCTGAGCTGGTTCGACGGGCCAGCGCTACGCGCAGGGGAGCAGTGGCGGCTGGCGGTGACCCTGC
AGCGCCCGGCCGGGTTGCTCAACCCGCATGGGCCGGACCTGGAGGCCCAGTTGCTGGCGCGGCGCATCGGTGCCACCGGC
TCGGTCAAGGCCGGGCAACTGCTGGCACCGGTTGCCGGCGGCTGGCGTGACCGCCTGCGCCAGCGCCTGCTGGCGGTTGA
CGCTCATGGCCGTCAGGCGGCGTTGGTAGCCCTGGTGCTCGGCGACGGCACGGGCCTGGCACGGCACGACTGGCAGACGC
TGCAGGCTACCGGCACGGTGCACCTGCTGGTAATTTCCGGGCAGCACATCGGCCTGGTCGCCGGCTTGCTGTACGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCGGCACGGCTGCCCTGGTTGCCCTCGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGGGCTGGCGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGCGCGACCTTGCCATTGCTGCTGGCGCTGGTTGCGGTGTTGCTGATTGAGCCGCTG
GCGGTGCTGCTGCCCGGTTTCTGGTTGTCGTTTGCGGCGGTGGCCACGCTTGTCTATTGCTTCAGCGCGCGGCTGGGCGG
CTGGCGGCCGTGGCAGGCCTGGACGCGGGCGCAATGGGGCATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCCACCGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTTGTGGCGGTACCGTGGGTCAGCCTGGCGGTACTGCCGCTGGCGTTG
CTGGGCACGCTGCTGTTGCCGCTGGGTGGGGTAGGCGAGGCACTGTTGTGGCTGGCGGGTGGCTTGCTCGACGGGTTGTT
CCGGCTGCTGGCGCTGGTGGCACAGCAGCGCCCGGCGTGGCTGCCGCCGGCGTTGCCGTGGTGGGCCTGGCTGCTGGTCT
GTCTGGGGACCTGGCTATTGCTGCTGCCCCGTGGGGTGCCGTTGCGTGGCTTGGGTGGGGTGATGCTGCTGGCATTGTGG
GTACCTAGGGCGACGGTGCCATTCGGGCAAGTCGAAGTCTGGCAGCTGGATGTCGGTCAGGGCCTGGCGGTGCTGTTGCG
CACGCGGCATCACGACCTGCTGTACGACGCCGGGCCGGCCAGGGGCGACACCGACCTGGGTGAGCGGGTGGTACTGCCGA
CCCTGCGCAAGCTGGGGGTGCGCCGCCTGGACCTGCTGCTGGTCAGCCACGCCCACGCCGACCATGCCGGCGGTGCTGCG
GCGATAGCGCGTGGTTTGCCGGTACGGCGCGCCATCGGTGGTGAAGCGCTGCAAGATCTCCAGTTGCAGCCGTGTGCCAG
TGGCGAGCAATGGGCATGGGATGGGGTGCATTTTTCGCTGTGGCGCTGGGCTGACGGGCAGAGCAGCAATGACCGGTCCT
GCGTGTTGCTGGTCGAGGCGCAGGGCGAGCGTTTGCTGCTGGCAGGCGATATGGAGGCCGCTGCCGAACAGGCTTGGTTG
GCGGCCACCGACACACCCCGTATCGATTGGTTGCAGGCGCCGCACCATGGCAGCCGGAGTTCTTCCACCGAGGCTTTCAT
CCGGGCCACGGCGCCGCGTGGGGTGCTGGTGTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGATGGTGCATGACACGGCGGTGGAGGGGGCATTGCGGTTGGTGTTGGGGCGTCATGGG
GCGGTTGAAAGTGTGCGGGAGCAGCGACGGTTTTGGCGGGATTCGGCACAGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.75

97.693

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.419

100

0.384