Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU763_RS07605 Genome accession   NZ_CP077097
Coordinates   1631224..1631859 (+) Length   211 a.a.
NCBI ID   WP_170028901.1    Uniprot ID   -
Organism   Pseudomonas anuradhapurensis strain RD8MR3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1626224..1636859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU763_RS07590 (HU763_007590) - 1627122..1627901 (+) 780 WP_186680575.1 ABC transporter permease -
  HU763_RS07595 (HU763_007595) - 1627785..1628411 (-) 627 WP_186689089.1 DUF2062 domain-containing protein -
  HU763_RS07600 (HU763_007600) comA 1628554..1630767 (+) 2214 WP_186689092.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU763_RS07605 (HU763_007605) exbB 1631224..1631859 (+) 636 WP_170028901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU763_RS07610 (HU763_007610) - 1631856..1632290 (+) 435 WP_170028902.1 ExbD/TolR family protein -
  HU763_RS07615 (HU763_007615) lpxK 1632290..1633291 (+) 1002 WP_186689094.1 tetraacyldisaccharide 4'-kinase -
  HU763_RS07620 (HU763_007620) - 1633335..1633520 (+) 186 WP_003247142.1 Trm112 family protein -
  HU763_RS07625 (HU763_007625) kdsB 1633517..1634281 (+) 765 WP_186689096.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU763_RS07630 (HU763_007630) - 1634281..1634745 (+) 465 WP_186680300.1 low molecular weight protein-tyrosine-phosphatase -
  HU763_RS07635 (HU763_007635) murB 1634742..1635761 (+) 1020 WP_170028906.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=579213 HU763_RS07605 WP_170028901.1 1631224..1631859(+) (exbB) [Pseudomonas anuradhapurensis strain RD8MR3]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFIGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579213 HU763_RS07605 WP_170028901.1 1631224..1631859(+) (exbB) [Pseudomonas anuradhapurensis strain RD8MR3]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTTGCTGCCGGGCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAAGCTGCCTCGCGCGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATCGGCTCGCAGATGACCGCCAACGCAGCCGTACTGGCGGGCGGCATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGCTCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825