Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HU772_RS07445 Genome accession   NZ_CP077095
Coordinates   1638338..1640551 (+) Length   737 a.a.
NCBI ID   WP_186662365.1    Uniprot ID   A0A9E6TZI9
Organism   Pseudomonas xantholysinigenes strain RW9S1A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633338..1645551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU772_RS07425 (HU772_007425) - 1635204..1635827 (+) 624 WP_186662369.1 glutathione S-transferase -
  HU772_RS07430 (HU772_007430) - 1635960..1636892 (+) 933 WP_186662368.1 ABC transporter ATP-binding protein -
  HU772_RS07435 (HU772_007435) - 1636889..1637668 (+) 780 WP_186662367.1 ABC transporter permease -
  HU772_RS07440 (HU772_007440) - 1637552..1638193 (-) 642 WP_186662366.1 DUF2062 domain-containing protein -
  HU772_RS07445 (HU772_007445) comA 1638338..1640551 (+) 2214 WP_186662365.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU772_RS07450 (HU772_007450) exbB 1640676..1641311 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU772_RS07455 (HU772_007455) - 1641308..1641742 (+) 435 WP_186662364.1 biopolymer transporter ExbD -
  HU772_RS07460 (HU772_007460) lpxK 1641742..1642752 (+) 1011 WP_186662363.1 tetraacyldisaccharide 4'-kinase -
  HU772_RS07465 (HU772_007465) - 1642794..1642979 (+) 186 WP_011532874.1 Trm112 family protein -
  HU772_RS07470 (HU772_007470) kdsB 1642976..1643740 (+) 765 WP_186662362.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU772_RS07475 (HU772_007475) - 1643740..1644204 (+) 465 WP_186662361.1 low molecular weight protein-tyrosine-phosphatase -
  HU772_RS07480 (HU772_007480) murB 1644201..1645220 (+) 1020 WP_186662360.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79695.03 Da        Isoelectric Point: 11.1578

>NTDB_id=579184 HU772_RS07445 WP_186662365.1 1638338..1640551(+) (comA) [Pseudomonas xantholysinigenes strain RW9S1A]
MRTGMLAFALGLLSLRFLPALPPDGWLLALLLCGLACLRSRGWPLGCWVLGLCWACWSAQQALDDRLAPALEGRTLWLEG
RVVGLPTRTEQGVRFELAQPLSRRAALPKRLQLSWFAGPELRAGERWRLAVNLRRPAGLLNPHGPDREALLLAQRIGATG
TVKAGERLGAAPPGWRDALRQRLLAVDAQGREAALVALVLGDGGGLARQDWQVLQATGTVHLLVISGQHIGLLAGLMYGL
VAGLARLGAWPSRLPWLPWACALAMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAGLALLLALLGVLLIEPL
ASLLPGFWLSFAAVAVLVLCFSARLGGWRPWQAWTRAQWVIAVGLLPLLLALGLPISLTAPLANLLAVPWISLAVLPLAL
LGTAMLAVPWLGEGMLWLAGLALDGLFQCLAWGARRLPAWVPEPLPLWAWLLVALGALLVLLPRGVPLRMPGAVLLLALW
APREQVPHGQVQVWLLDVGQGLAVLLRTRRHALLYDAGPALGASDLGDSVVLPTLRRLGVKQLDLMLISHGHADHAGGAG
ALRRGLPVKRVMAGEVAGLAPAQRCASGERWQWDGVDFELWQWAQGASSNDRSCVLRVVANGERLLLAGDMEAGAERAWL
AASEDLRIDWLQAPHHGSRTSSTEPFIKALVPRGVMISRGRHNGFGHPHAQVIERYRRHGVVVHDTAVEGALRLVLGNHG
EVEGVRGQRRFWRSIED

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=579184 HU772_RS07445 WP_186662365.1 1638338..1640551(+) (comA) [Pseudomonas xantholysinigenes strain RW9S1A]
ATGCGCACAGGGATGCTGGCGTTCGCCCTCGGGCTGTTGAGTCTGCGATTTCTCCCGGCATTGCCGCCGGACGGATGGTT
GTTGGCCCTGTTGCTGTGCGGCCTGGCGTGCCTGCGCAGCCGGGGCTGGCCGCTCGGTTGTTGGGTGCTGGGCCTGTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGTTGGATGATCGCCTGGCCCCCGCGCTGGAAGGTCGAACCCTGTGGCTGGAAGGG
CGGGTGGTGGGGTTGCCGACGCGCACCGAGCAGGGTGTACGTTTCGAGCTGGCGCAGCCACTGTCACGCCGGGCCGCGTT
GCCCAAGCGTTTGCAGCTGAGCTGGTTCGCCGGCCCCGAGTTGCGCGCCGGCGAACGTTGGCGGCTGGCGGTCAACCTGC
GCCGGCCCGCGGGCTTGCTCAATCCCCATGGCCCGGATCGCGAAGCCTTGTTGCTGGCGCAGCGCATCGGCGCGACTGGC
ACGGTCAAGGCCGGCGAGCGTCTGGGCGCGGCGCCGCCCGGCTGGCGTGATGCCCTGCGCCAGCGCCTGCTGGCCGTGGA
CGCCCAGGGGCGAGAAGCGGCGCTGGTGGCCTTGGTGCTCGGTGATGGGGGAGGGTTGGCGCGTCAGGATTGGCAGGTCC
TGCAGGCCACCGGCACCGTGCATCTGTTGGTCATTTCCGGTCAGCACATCGGTTTGCTGGCCGGGCTGATGTATGGCCTG
GTGGCCGGGCTTGCGCGCCTGGGGGCCTGGCCATCGCGCCTGCCCTGGCTGCCCTGGGCTTGCGCCTTGGCGATGGCGGC
TGCGCTGGGTTACGGCTGGTTGGCCGGGTTTGGCGTGCCCGTGCAACGGGCGTGTCTGATGCTGGCCGTGGTATTGCTCT
GGCGCCTGCGCTTTCGCCATCTGGGGGCGGGGCTGGCGCTGTTGCTGGCACTGCTGGGCGTCTTGCTGATCGAGCCGCTG
GCCAGTTTGCTGCCAGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGGTGCTGGTGTTGTGCTTCTCGGCCCGTCTTGGTGG
CTGGCGGCCGTGGCAGGCCTGGACGCGAGCGCAGTGGGTGATTGCCGTGGGGTTGTTGCCGTTGCTGCTGGCGCTGGGGT
TGCCGATCAGCCTGACGGCGCCGTTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGGCTGTGTTGCCACTGGCGTTG
CTGGGCACGGCCATGTTGGCGGTGCCTTGGCTGGGGGAGGGCATGTTGTGGCTGGCAGGGCTTGCCCTGGATGGCCTGTT
CCAGTGCCTGGCGTGGGGCGCGCGGCGCCTGCCCGCCTGGGTGCCCGAGCCTTTGCCGTTGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGCTGGTATTGCTGCCGCGCGGCGTGCCTTTGCGCATGCCGGGCGCGGTGCTGTTGCTGGCGCTGTGG
GCGCCGCGTGAGCAGGTGCCCCATGGTCAGGTGCAAGTATGGCTGCTTGATGTGGGGCAAGGGTTGGCGGTGCTGCTGCG
TACCCGCCGGCACGCGCTGCTGTATGACGCTGGGCCGGCCCTGGGCGCTAGCGACCTGGGTGACAGCGTGGTGCTGCCGA
CCTTGCGCCGGTTGGGGGTGAAACAGCTGGACCTGATGCTGATCAGCCACGGCCACGCCGATCACGCTGGCGGAGCCGGG
GCCTTGAGGCGGGGTCTGCCGGTCAAGCGGGTAATGGCGGGCGAGGTAGCGGGGCTTGCGCCCGCGCAGCGCTGCGCCAG
TGGCGAGCGCTGGCAATGGGATGGCGTCGACTTCGAGCTGTGGCAGTGGGCTCAGGGGGCTTCGAGCAACGATCGCTCTT
GTGTGCTGCGGGTGGTTGCCAATGGCGAGCGCCTGCTATTGGCGGGCGACATGGAGGCCGGCGCGGAGCGGGCCTGGCTG
GCGGCTAGCGAGGACCTGCGGATCGATTGGTTGCAGGCGCCGCACCATGGCAGCCGCACATCGTCCACAGAACCGTTCAT
CAAGGCGCTGGTACCGCGGGGGGTGATGATTTCCCGTGGGCGACACAATGGCTTCGGGCATCCTCATGCGCAGGTAATCG
AACGGTATCGGCGACATGGGGTGGTAGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGCTGGGGAATCATGGT
GAGGTTGAGGGCGTGCGTGGGCAGCGGCGGTTCTGGCGCTCTATCGAGGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-671)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.275

97.558

0.569
  comA Ralstonia pseudosolanacearum GMI1000

37.032

100

0.389