Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU772_RS07450 Genome accession   NZ_CP077095
Coordinates   1640676..1641311 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas xantholysinigenes strain RW9S1A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635676..1646311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU772_RS07430 (HU772_007430) - 1635960..1636892 (+) 933 WP_186662368.1 ABC transporter ATP-binding protein -
  HU772_RS07435 (HU772_007435) - 1636889..1637668 (+) 780 WP_186662367.1 ABC transporter permease -
  HU772_RS07440 (HU772_007440) - 1637552..1638193 (-) 642 WP_186662366.1 DUF2062 domain-containing protein -
  HU772_RS07445 (HU772_007445) comA 1638338..1640551 (+) 2214 WP_186662365.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU772_RS07450 (HU772_007450) exbB 1640676..1641311 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU772_RS07455 (HU772_007455) - 1641308..1641742 (+) 435 WP_186662364.1 biopolymer transporter ExbD -
  HU772_RS07460 (HU772_007460) lpxK 1641742..1642752 (+) 1011 WP_186662363.1 tetraacyldisaccharide 4'-kinase -
  HU772_RS07465 (HU772_007465) - 1642794..1642979 (+) 186 WP_011532874.1 Trm112 family protein -
  HU772_RS07470 (HU772_007470) kdsB 1642976..1643740 (+) 765 WP_186662362.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU772_RS07475 (HU772_007475) - 1643740..1644204 (+) 465 WP_186662361.1 low molecular weight protein-tyrosine-phosphatase -
  HU772_RS07480 (HU772_007480) murB 1644201..1645220 (+) 1020 WP_186662360.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=579185 HU772_RS07450 WP_028690976.1 1640676..1641311(+) (exbB) [Pseudomonas xantholysinigenes strain RW9S1A]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579185 HU772_RS07450 WP_028690976.1 1640676..1641311(+) (exbB) [Pseudomonas xantholysinigenes strain RW9S1A]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAACGCCTGTGGACTCTGCGTGCCAGCCGTGTCACTCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCTTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAATGCCGCGGTGCTGGCCGGCGGTATTTCCAAGGCTCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829