Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MUA35_RS08215 Genome accession   NZ_CP094770
Coordinates   1683405..1684007 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain IVB6201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1678405..1689007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS08195 (MUA35_08170) yajC 1679901..1680161 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  MUA35_RS08200 (MUA35_08175) tgt 1680180..1681319 (-) 1140 WP_262607536.1 tRNA guanosine(34) transglycosylase Tgt -
  MUA35_RS08205 (MUA35_08180) queA 1681342..1682367 (-) 1026 WP_262538601.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  MUA35_RS08210 (MUA35_08185) ruvB 1682369..1683373 (-) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MUA35_RS08215 (MUA35_08190) ruvA 1683405..1684007 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  MUA35_RS08220 (MUA35_08195) - 1684021..1684476 (-) 456 WP_000368902.1 ACT domain-containing protein -
  MUA35_RS08225 (MUA35_08200) obgE 1684489..1685781 (-) 1293 WP_000496098.1 GTPase ObgE -
  MUA35_RS08230 (MUA35_08205) rpmA 1686268..1686552 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  MUA35_RS08235 (MUA35_08210) - 1686564..1686884 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  MUA35_RS08240 (MUA35_08215) rplU 1686890..1687198 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  MUA35_RS08245 (MUA35_08220) mreD 1687491..1688021 (-) 531 WP_001259927.1 rod shape-determining protein MreD -
  MUA35_RS08250 (MUA35_08225) mreC 1688021..1688863 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=579166 MUA35_RS08215 WP_000271547.1 1683405..1684007(-) (ruvA) [Staphylococcus aureus strain IVB6201]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=579166 MUA35_RS08215 WP_000271547.1 1683405..1684007(-) (ruvA) [Staphylococcus aureus strain IVB6201]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTGGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTACTTTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCATTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425