Detailed information NTG0579162

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU725_RS06885
• Genome accession: NZ_CP077094
• Coordinates: 1489280..1491487 (+)
• Length: 735 a.a.
• NCBI ID: WP_186476656.1
• Uniprot ID: -
• Organism: Pseudomonas promysalinigenes strain RW10S1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1484280..1496487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU725_RS06860 (HU725_006860)	-	1484470..1485996 (-)	1527	WP_186476654.1	hypothetical protein	-
HU725_RS06865 (HU725_006865)	-	1486163..1486786 (+)	624	WP_186476655.1	glutathione S-transferase	-
HU725_RS06870 (HU725_006870)	-	1486919..1487851 (+)	933	WP_060478265.1	ABC transporter ATP-binding protein	-
HU725_RS06875 (HU725_006875)	-	1487848..1488627 (+)	780	WP_060478209.1	ABC transporter permease	-
HU725_RS06880 (HU725_006880)	-	1488511..1489137 (-)	627	WP_155500265.1	DUF2062 domain-containing protein	-
HU725_RS06885 (HU725_006885)	comA	1489280..1491487 (+)	2208	WP_186476656.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU725_RS06890 (HU725_006890)	exbB	1491685..1492320 (+)	636	WP_186476657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU725_RS06895 (HU725_006895)	-	1492317..1492751 (+)	435	WP_186476658.1	biopolymer transporter ExbD	-
HU725_RS06900 (HU725_006900)	lpxK	1492751..1493752 (+)	1002	WP_186476659.1	tetraacyldisaccharide 4'-kinase	-
HU725_RS06905 (HU725_006905)	-	1493806..1493991 (+)	186	WP_003247142.1	Trm112 family protein	-
HU725_RS06910 (HU725_006910)	kdsB	1493988..1494752 (+)	765	WP_186476660.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU725_RS06915 (HU725_006915)	-	1494752..1495216 (+)	465	WP_186476661.1	low molecular weight protein-tyrosine-phosphatase	-
HU725_RS06920 (HU725_006920)	murB	1495213..1496232 (+)	1020	WP_186476662.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 735 a.a.
• Molecular weight: 79312.26 Da
• Isoelectric Point: 9.9448

>NTDB_id=579162 HU725_RS06885 WP_186476656.1 1489280..1491487(+) (comA) [Pseudomonas promysalinigenes strain RW10S1]
MRTGMFALALGLLCLGFLPVLPSVGWLLLLVLAGACCLPTRLWPLGCFALGLAWACWSAQLALNDRLEAGLDGRTLWLEG
RVVGLPTRTAQGVRFELQQAHSRRAELPQRLQLSWFDGPPIRAGESWRVAATLQRPAGLLNPHGPDRAAQLLARRIGATG
TVKAGDLTRAVAPDWRDALRERLLRVDAHGQQAGLAALVLGDGAGLAREQWQALQATGTVHLLVISGQHIGLVAGMLYAL
VASLARWGLWPRSWPWLPWACGLALVAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGALLPLLLALTLVLLVDPL
AALLPGFWLSFAAVAILIYSFAGRLGNWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLTAPMANLLAVPWVSVAVLPPAL
LGTLLLPVPGVGEGLLWLAGAALHLLFALLAWVAAWQPAWVPPALPIGPWLLVCLGALLLLLPGGVPLRSLGAVMLLALW
APKPPVPHGQVEVWQLDVGQGLAVLLRTRHHTLLYDAGPAKGDFDLGERVVLPTLRKLGVAGLDLMLISHAHADHAGGAV
AIIKGLPVARVIGGEALEEVHVQPCASSERWTWDGVDFSLWRWESGQSSNDRSCVLLVEAQGERLLLAGDIEAGAERAWL
KAHEAPRIDWLQAPHHGSRSSSTEAFIRATTPHGVLISRGRNNSFGHPHAQVVERYRRYGMVMHDTAVEGALRLVLGAQG
EVESVGRQRRFWRVQ

Nucleotide

• Length: 2208 bp

>NTDB_id=579162 HU725_RS06885 WP_186476656.1 1489280..1491487(+) (comA) [Pseudomonas promysalinigenes strain RW10S1]
ATGCGCACAGGGATGTTTGCGCTCGCCCTCGGGCTGTTGTGCCTGGGCTTTCTCCCGGTATTGCCATCGGTCGGTTGGCT
GTTGTTGCTAGTGCTGGCAGGGGCTTGTTGCCTGCCCACGCGGCTCTGGCCGCTGGGCTGCTTCGCGCTGGGATTAGCCT
GGGCCTGCTGGTCGGCACAGCTGGCATTGAATGACCGGCTAGAGGCTGGTTTGGACGGCCGTACGCTGTGGTTGGAGGGG
CGGGTGGTTGGCTTGCCCACGCGCACTGCGCAGGGCGTGCGTTTTGAGCTGCAACAGGCGCATTCGCGCCGCGCTGAACT
ACCGCAGCGCCTGCAATTGAGCTGGTTCGATGGCCCACCCATTCGTGCTGGCGAGTCTTGGCGGGTGGCGGCGACCTTGC
AGCGCCCGGCAGGTCTGCTCAACCCCCATGGCCCTGATCGAGCGGCGCAGTTGCTGGCCCGGCGTATCGGTGCCACAGGC
ACGGTCAAAGCCGGTGACCTTACCCGCGCGGTGGCCCCCGACTGGCGCGACGCGCTACGTGAGCGGCTACTGAGGGTCGA
CGCCCATGGGCAGCAAGCGGGCTTGGCAGCCTTGGTGCTCGGTGACGGCGCGGGCCTTGCCCGGGAACAGTGGCAGGCGC
TGCAGGCAACTGGCACGGTGCATCTGCTGGTGATTTCTGGGCAACACATTGGCTTGGTCGCCGGCATGCTCTATGCCTTG
GTGGCAAGCCTGGCACGCTGGGGCCTGTGGCCGCGTAGTTGGCCATGGTTACCCTGGGCATGCGGCTTGGCGCTGGTGGC
AGCGCTGGCCTACGGCTGGCTGGCCGGCGCCGGCGTGCCGGTGCAGCGCGCCTGTCTGATGTTGGCAGTTGTGCTGTTAT
GGCGATTGCGGTTTCGGCAGCTGGGGGCACTGTTGCCTTTGCTGCTGGCATTGACCTTGGTATTGCTGGTCGACCCCTTG
GCTGCGTTATTGCCAGGGTTCTGGCTGTCATTCGCGGCGGTGGCGATACTCATCTACAGCTTCGCTGGCCGGCTTGGCAA
CTGGCGCCCCTGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCGTCGGTTTATTGCCGGTATTGTTGGCCACAGGGT
TGCCGGTGAGTCTGACTGCGCCGATGGCGAACCTGCTGGCGGTGCCATGGGTGAGCGTGGCGGTGTTGCCCCCGGCTTTG
CTCGGGACCTTGTTGTTGCCAGTGCCGGGGGTAGGGGAGGGTTTGCTATGGCTTGCGGGCGCGGCGCTGCACCTGCTGTT
CGCCCTGCTTGCGTGGGTGGCCGCATGGCAACCGGCATGGGTGCCGCCAGCGCTACCGATAGGGCCCTGGTTGCTGGTGT
GCCTAGGGGCGCTGCTGCTATTGCTGCCTGGCGGCGTGCCGCTGCGCAGCCTGGGCGCGGTCATGTTACTGGCCTTGTGG
GCACCGAAGCCGCCTGTGCCCCATGGGCAGGTCGAGGTGTGGCAGCTCGATGTCGGCCAAGGCCTTGCGGTTTTGCTGCG
TACTCGACATCACACGTTGCTATACGACGCAGGGCCTGCCAAAGGCGATTTCGACCTGGGGGAACGAGTAGTGCTGCCCA
CCCTGCGTAAATTGGGTGTGGCGGGCCTGGACCTGATGCTGATCAGTCACGCGCATGCGGACCACGCCGGTGGCGCCGTG
GCCATCATCAAAGGCTTGCCGGTGGCTCGCGTGATAGGTGGCGAAGCGCTGGAAGAGGTACACGTGCAGCCCTGTGCGTC
CAGTGAACGGTGGACTTGGGACGGCGTGGATTTTTCGCTGTGGCGCTGGGAAAGCGGGCAAAGCAGCAATGATCGTTCCT
GCGTGCTACTGGTCGAGGCGCAAGGTGAGCGTTTGCTGTTGGCCGGCGATATCGAGGCAGGCGCCGAACGCGCCTGGCTC
AAGGCCCATGAAGCGCCACGCATCGACTGGCTTCAGGCCCCGCACCATGGCAGCCGCAGTTCATCCACCGAGGCGTTCAT
CCGTGCCACTACGCCGCATGGGGTGTTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCCCACGCACAAGTGGTCG
AGCGGTATCGGCGCTATGGGATGGTGATGCATGACACTGCTGTGGAGGGTGCGTTGCGGCTGGTGCTCGGTGCGCAGGGT
GAGGTCGAAAGTGTGGGGCGCCAGCGAAGGTTTTGGCGAGTGCAGTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

• Domain of unknown function (DUF4131) (DUF4131) (21-166)

• Competence protein (Competence) (198-460)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.333	97.959	0.571
comA	Ralstonia pseudosolanacearum GMI1000	33.791	100	0.369