Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU725_RS06890 Genome accession   NZ_CP077094
Coordinates   1491685..1492320 (+) Length   211 a.a.
NCBI ID   WP_186476657.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain RW10S1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486685..1497320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU725_RS06870 (HU725_006870) - 1486919..1487851 (+) 933 WP_060478265.1 ABC transporter ATP-binding protein -
  HU725_RS06875 (HU725_006875) - 1487848..1488627 (+) 780 WP_060478209.1 ABC transporter permease -
  HU725_RS06880 (HU725_006880) - 1488511..1489137 (-) 627 WP_155500265.1 DUF2062 domain-containing protein -
  HU725_RS06885 (HU725_006885) comA 1489280..1491487 (+) 2208 WP_186476656.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU725_RS06890 (HU725_006890) exbB 1491685..1492320 (+) 636 WP_186476657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU725_RS06895 (HU725_006895) - 1492317..1492751 (+) 435 WP_186476658.1 biopolymer transporter ExbD -
  HU725_RS06900 (HU725_006900) lpxK 1492751..1493752 (+) 1002 WP_186476659.1 tetraacyldisaccharide 4'-kinase -
  HU725_RS06905 (HU725_006905) - 1493806..1493991 (+) 186 WP_003247142.1 Trm112 family protein -
  HU725_RS06910 (HU725_006910) kdsB 1493988..1494752 (+) 765 WP_186476660.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU725_RS06915 (HU725_006915) - 1494752..1495216 (+) 465 WP_186476661.1 low molecular weight protein-tyrosine-phosphatase -
  HU725_RS06920 (HU725_006920) murB 1495213..1496232 (+) 1020 WP_186476662.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22817.09 Da        Isoelectric Point: 7.3616

>NTDB_id=579163 HU725_RS06890 WP_186476657.1 1491685..1492320(+) (exbB) [Pseudomonas promysalinigenes strain RW10S1]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579163 HU725_RS06890 WP_186476657.1 1491685..1492320(+) (exbB) [Pseudomonas promysalinigenes strain RW10S1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCGTTGCCGCCATGGCGATCGTCGT
CGAACGTCTGTGGACTCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCACTGGGCGAGATCCTCGCGGCAGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGAGTCATTCACGAACTCGAGCGCTACAT
CAGTACCCTCGGCACCATTGCCGCCATGGCGCCACTGCTTGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GCGCTTTCATGGGCTCGCAAATGACCGCAAACGCCGCTGTGCTGGCCGGGGGCATCTCCAAGGCTCTGGTTACTACCGCA
GCCGGCCTGATGGTGGGGATCCCGGCGGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTGGGCAT
GGAGCAAGAAGCGATCAAACTGGTGGAGGTGGTCCAGGGCGACCGGGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829