Detailed information NTG0579150

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU752_RS24605
• Genome accession: NZ_CP077093
• Coordinates: 5502170..5504383 (-)
• Length: 737 a.a.
• NCBI ID: WP_186681549.1
• Uniprot ID: A0A9E6TQN0
• Organism: Pseudomonas vanderleydeniana strain RW8P3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5497170..5509383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU752_RS24570 (HU752_024570)	murB	5497355..5498374 (-)	1020	WP_186681539.1	UDP-N-acetylmuramate dehydrogenase	-
HU752_RS24575 (HU752_024575)	-	5498371..5498835 (-)	465	WP_186681541.1	low molecular weight protein-tyrosine-phosphatase	-
HU752_RS24580 (HU752_024580)	kdsB	5498835..5499599 (-)	765	WP_186681543.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU752_RS24585 (HU752_024585)	-	5499596..5499781 (-)	186	WP_017905777.1	Trm112 family protein	-
HU752_RS24590 (HU752_024590)	lpxK	5499807..5500817 (-)	1011	WP_186681545.1	tetraacyldisaccharide 4'-kinase	-
HU752_RS24595 (HU752_024595)	-	5500817..5501245 (-)	429	WP_017905779.1	biopolymer transporter ExbD	-
HU752_RS24600 (HU752_024600)	exbB	5501242..5501877 (-)	636	WP_186681547.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU752_RS24605 (HU752_024605)	comA	5502170..5504383 (-)	2214	WP_186681549.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU752_RS24610 (HU752_024610)	-	5504520..5505041 (+)	522	WP_186681550.1	DUF2062 domain-containing protein	-
HU752_RS24615 (HU752_024615)	-	5505192..5505971 (-)	780	WP_186681552.1	ABC transporter permease	-
HU752_RS24620 (HU752_024620)	-	5505968..5506900 (-)	933	WP_186681554.1	ABC transporter ATP-binding protein	-
HU752_RS24625 (HU752_024625)	-	5507081..5507704 (-)	624	WP_186681556.1	glutathione S-transferase	-
HU752_RS24630 (HU752_024630)	-	5507748..5508407 (-)	660	WP_186681558.1	transglutaminase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 80061.81 Da
• Isoelectric Point: 10.5123

>NTDB_id=579150 HU752_RS24605 WP_186681549.1 5502170..5504383(-) (comA) [Pseudomonas vanderleydeniana strain RW8P3]
MRTGMLALAAGLLCLRALPQLPPLGWLPLLALAGLVLLAFRRYAVALFLLGFSWACLQAHWALADRLAPELDGQTLWLEG
QVVGLPENGGAVQRFLLEEVTSRRAVLPRRMRLAWYAGPVVSSGERWRLAVKLKSPSGLLNPHGFDREAWLLAQRIGATG
TIKDGQRLAAAAGSWRDGIRQRMLQVDARGQSATLVALVLGDGSGLSTETWQLLQDTGTVHLLVISGQHIGLFAALVYAL
VAGAARYGLWPRRLPWVPWACALAFAAALGYGLLAGFGIPVQRACAMIGLVLLWRLRYRHLGVGWPLLLALDLVLVVEPL
ASLRPGFWLSFAAVTVLIFCFAGRLGAWSPWQTWTRAQWTIALGLVPLLLALGLPISLSGPWVNLVAVPWISLAVLPLAL
LGTLALPLPWIGESLLWLAGGLLEILFQGLDLVATQLPAWLPDTLPPWAWGLGSLGILLLLLPAGVPLRPLGWPLAALVV
LSPPSRVPEGHAEVWQLDVGQGLAILVRTRHHSLLYDAGPRFGEFDLGQRVVLPSLRKLGVRQLDLMLLSHADADHAGGA
LAIRDGLPVSRVISGDARGLPKRLRAGDCSSGERWQWDGVSFELWQWPAAQDSNQRSCVLQVEARGERLLLTGDIDTRAE
QAFLESLLAVGTDWLQAPHHGSRSSSSMSFLQRLAPRAVLISRGRGNSFGHPHPQVMARYQALGMAVHDSAEQGAVRLLL
GAFGGAQSQREQRRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=579150 HU752_RS24605 WP_186681549.1 5502170..5504383(-) (comA) [Pseudomonas vanderleydeniana strain RW8P3]
ATGCGCACAGGGATGTTGGCGCTGGCGGCGGGCCTGCTGTGCCTGCGCGCTCTGCCGCAGTTGCCGCCGCTGGGTTGGTT
GCCGTTGCTGGCGCTGGCCGGCCTGGTGTTGTTGGCGTTTCGCCGTTATGCCGTCGCGCTGTTCCTGCTCGGTTTCAGCT
GGGCCTGCCTGCAGGCTCACTGGGCCCTGGCGGATCGCCTGGCGCCGGAGCTGGATGGCCAGACGCTGTGGCTGGAGGGG
CAGGTGGTGGGGCTGCCGGAGAACGGTGGTGCGGTGCAGCGCTTCCTGCTGGAAGAGGTGACCTCGCGTCGCGCCGTGCT
GCCCCGGCGGATGCGTCTGGCCTGGTACGCCGGCCCGGTGGTCAGCAGCGGCGAGCGCTGGCGGCTGGCGGTCAAGCTCA
AGTCGCCGAGTGGCCTGCTCAATCCCCATGGTTTCGACCGTGAAGCCTGGCTGCTCGCCCAGCGAATCGGCGCTACCGGC
ACCATCAAGGATGGTCAACGATTGGCTGCGGCTGCGGGGTCCTGGCGTGATGGCATTCGCCAACGCATGCTCCAGGTCGA
TGCCCGGGGACAATCGGCTACCCTGGTGGCGCTGGTGCTGGGCGATGGCTCGGGCTTGTCGACCGAGACCTGGCAGCTCC
TGCAGGACACTGGCACCGTGCATTTGCTGGTGATTTCCGGGCAGCATATCGGGCTGTTCGCCGCGCTGGTGTATGCCCTG
GTGGCAGGGGCGGCGCGTTATGGCCTATGGCCGCGACGCCTGCCCTGGGTGCCCTGGGCCTGTGCCCTGGCCTTCGCCGC
GGCCCTGGGGTACGGCTTGCTGGCGGGGTTCGGCATTCCGGTGCAGCGCGCCTGCGCGATGATCGGCCTGGTGCTGCTCT
GGCGCCTGCGCTATCGCCATCTCGGCGTAGGCTGGCCTTTGCTGCTGGCGCTCGATCTGGTCCTGGTGGTCGAACCCCTG
GCCAGCCTGCGGCCGGGGTTCTGGCTGTCCTTTGCCGCCGTGACGGTGCTGATTTTCTGTTTCGCCGGACGATTGGGGGC
CTGGAGCCCCTGGCAAACCTGGACCCGCGCGCAATGGACCATCGCCCTCGGCCTGGTGCCGTTGCTGCTGGCGCTCGGCT
TGCCCATCAGCCTCAGCGGGCCGTGGGTCAACCTGGTCGCGGTGCCCTGGATCAGCCTGGCCGTGTTGCCGTTGGCCCTG
CTCGGCACCCTGGCCTTGCCGCTGCCCTGGATCGGCGAATCATTATTGTGGCTGGCCGGTGGCCTGCTGGAGATCCTTTT
CCAGGGGCTGGACCTGGTAGCGACGCAGCTGCCGGCGTGGTTGCCCGACACCCTGCCACCCTGGGCCTGGGGACTCGGCA
GCCTCGGTATCCTGCTGTTGTTGCTGCCGGCCGGGGTACCCCTGCGGCCGTTGGGCTGGCCCTTGGCGGCGCTGGTCGTG
TTATCGCCGCCGTCCCGCGTGCCCGAGGGGCACGCCGAGGTCTGGCAGCTGGACGTCGGGCAGGGCCTGGCGATCCTGGT
TCGTACCCGCCATCACAGCCTGCTGTATGACGCCGGGCCGCGTTTCGGCGAGTTCGACCTAGGCCAGAGGGTGGTCCTGC
CATCGCTGCGCAAGCTGGGCGTGCGCCAGTTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCATGCCGGTGGAGCC
CTGGCGATCCGCGATGGCTTGCCGGTGAGCCGGGTGATCAGTGGTGATGCCCGTGGGCTACCCAAACGGTTGCGCGCCGG
AGACTGCTCCAGCGGCGAGCGCTGGCAGTGGGACGGGGTGAGCTTCGAACTCTGGCAATGGCCTGCGGCGCAGGACAGCA
ACCAGCGCTCCTGCGTGCTGCAGGTCGAGGCCCGGGGGGAGCGGCTGTTGCTGACCGGGGACATCGACACCCGGGCCGAG
CAGGCCTTTCTCGAGAGTCTATTGGCCGTTGGCACCGACTGGCTGCAGGCCCCCCACCATGGCAGCCGCAGCTCCTCGTC
GATGAGCTTTCTCCAGCGCCTGGCGCCGCGGGCCGTGCTGATCTCGCGCGGCCGTGGCAACAGCTTCGGGCATCCGCATC
CCCAGGTGATGGCGCGTTACCAGGCGCTGGGCATGGCGGTGCACGACAGTGCCGAGCAGGGCGCCGTACGCCTGTTGCTC
GGGGCTTTTGGCGGTGCGCAGTCACAGCGCGAGCAAAGACGCTTCTGGCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.117	97.422	0.605
comA	Ralstonia pseudosolanacearum GMI1000	35.561	100	0.404