Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU752_RS24600 Genome accession   NZ_CP077093
Coordinates   5501242..5501877 (-) Length   211 a.a.
NCBI ID   WP_186681547.1    Uniprot ID   A0A9E6TQ36
Organism   Pseudomonas vanderleydeniana strain RW8P3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5496242..5506877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU752_RS24565 (HU752_024565) - 5496716..5497318 (-) 603 WP_186681537.1 NTP transferase domain-containing protein -
  HU752_RS24570 (HU752_024570) murB 5497355..5498374 (-) 1020 WP_186681539.1 UDP-N-acetylmuramate dehydrogenase -
  HU752_RS24575 (HU752_024575) - 5498371..5498835 (-) 465 WP_186681541.1 low molecular weight protein-tyrosine-phosphatase -
  HU752_RS24580 (HU752_024580) kdsB 5498835..5499599 (-) 765 WP_186681543.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU752_RS24585 (HU752_024585) - 5499596..5499781 (-) 186 WP_017905777.1 Trm112 family protein -
  HU752_RS24590 (HU752_024590) lpxK 5499807..5500817 (-) 1011 WP_186681545.1 tetraacyldisaccharide 4'-kinase -
  HU752_RS24595 (HU752_024595) - 5500817..5501245 (-) 429 WP_017905779.1 biopolymer transporter ExbD -
  HU752_RS24600 (HU752_024600) exbB 5501242..5501877 (-) 636 WP_186681547.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU752_RS24605 (HU752_024605) comA 5502170..5504383 (-) 2214 WP_186681549.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU752_RS24610 (HU752_024610) - 5504520..5505041 (+) 522 WP_186681550.1 DUF2062 domain-containing protein -
  HU752_RS24615 (HU752_024615) - 5505192..5505971 (-) 780 WP_186681552.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22995.16 Da        Isoelectric Point: 6.8768

>NTDB_id=579149 HU752_RS24600 WP_186681547.1 5501242..5501877(-) (exbB) [Pseudomonas vanderleydeniana strain RW8P3]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPEHLLGQVWVWIRDKQLDKEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQQAIKLVEVVQGDRDVEMPEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579149 HU752_RS24600 WP_186681547.1 5501242..5501877(-) (exbB) [Pseudomonas vanderleydeniana strain RW8P3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCGTGGGTATCATTGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCATCTGCTGGGACAGGTCTGGGTGTGGATTCGCGACA
AGCAGCTGGACAAGGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTGGGTGAGATTCTCGCTGCGGGCCTGGCGAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGTACCATCGCCGCCATGTCGCCGCTGCTCGGCCTGCTCGGGACGGTGCTGGGCATGATCGACATCTTCA
GCTCGTTCATGGGGGCGGGCATGACCACCAACGCGGCGGTCCTCGCCGGCGGTATTTCCAAGGCGCTGATCACTACCGCC
TCGGGCCTGATCGTCGGTATTCCCGCCGTGTTCTTCCACCGCTTCCTGCAGCGCCGGATCGATGAGCTGGTGGTTGGCAT
GGAGCAGCAGGCGATCAAGCTGGTCGAAGTGGTACAGGGCGACCGTGACGTGGAAATGCCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829