Detailed information NTG0579134

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HU752_RS05255
• Genome accession: NZ_CP077093
• Coordinates: 1179282..1180625 (-)
• Length: 447 a.a.
• NCBI ID: WP_186682715.1
• Uniprot ID: -
• Organism: Pseudomonas vanderleydeniana strain RW8P3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1174282..1185625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU752_RS05240 (HU752_005240)	-	1174456..1177587 (+)	3132	WP_186682708.1	pilus assembly protein	-
HU752_RS05245 (HU752_005245)	-	1177600..1177998 (+)	399	WP_186682710.1	type IV pilin protein	-
HU752_RS05250 (HU752_005250)	thiO	1178048..1179151 (+)	1104	WP_186682712.1	glycine oxidase ThiO	-
HU752_RS05255 (HU752_005255)	pilR	1179282..1180625 (-)	1344	WP_186682715.1	sigma-54 dependent transcriptional regulator	Regulator
HU752_RS05260 (HU752_005260)	pilS	1180628..1182217 (-)	1590	WP_186682717.1	PAS domain-containing sensor histidine kinase	Regulator
HU752_RS05265 (HU752_005265)	-	1182207..1182440 (-)	234	WP_186682719.1	PP0621 family protein	-
HU752_RS05270 (HU752_005270)	-	1182574..1183590 (-)	1017	WP_186682721.1	outer membrane protein assembly factor BamD	-
HU752_RS05275 (HU752_005275)	rluD	1183741..1184703 (+)	963	WP_186682723.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HU752_RS05280 (HU752_005280)	pgeF	1184700..1185425 (+)	726	WP_186682725.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49870.15 Da
• Isoelectric Point: 6.4126

>NTDB_id=579134 HU752_RS05255 WP_186682715.1 1179282..1180625(-) (pilR) [Pseudomonas vanderleydeniana strain RW8P3]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTQSARNVGEARDKLARDDFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKSGAFDFLTKPVDLARLRELVASALRLPVAGQKPATIDTRLLGDSLPMRALRKQVDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSVGGQQEEVVDVRILCATHKDLNAEVSAERFRQDLYYRLNVIELRVPALRERRDDIEPLATH
VLKRLAASSGQPAARLHPQALDTLKGYRFPGNVRELENMLERAYTLCENDQIEASDLRLAETPCKTAEAGEPSLAQIDNL
EDYLESIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=579134 HU752_RS05255 WP_186682715.1 1179282..1180625(-) (pilR) [Pseudomonas vanderleydeniana strain RW8P3]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGATGATGAACCGGATATCCGCGAACTCCTGGAAATAACTCTAGGCCGGAT
GAAACTCGATACCCAGAGCGCCCGCAATGTCGGTGAAGCCCGCGACAAGCTCGCCCGGGACGACTTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGACGGCACCGGCCTGGAACTGGTCCAGCACATCCAACAGCGCCATCCCCAGGTGCCAGTGGCG
ATGATCACGGCCTACGGCAGCCTCGATACCGCGATCAACGCACTCAAGTCAGGCGCCTTCGACTTTCTCACCAAACCGGT
GGATCTGGCCCGCTTGCGCGAACTGGTCGCCAGCGCCCTGCGGCTGCCAGTGGCCGGACAGAAACCGGCGACCATCGACA
CGCGCCTGCTCGGCGACTCACTGCCGATGCGCGCGCTGCGCAAGCAGGTCGACAAGCTGGCCCGCAGCCAGGCACCGGTG
TACATCAGCGGCGAGTCGGGGAGTGGCAAGGAACTGGTGGCACGCCTGATCCACGAGCAGGGCCCGCGTGCCGAGCGGCC
GTTCGTGCCGGTCAACTGCGGCGCGATCCCCTCGGAACTGATGGAGAGCGAGTTTTTCGGCCACCGCAAGGGCAGCTTCA
GTGGCGCGGTCGAGGACAAGCCCGGACTGTTCCAGGCCGCCAACGGCGGTACCCTGTTTCTCGACGAAGTGGCCGATCTG
CCGCTGGCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAGGCCGTGCGCAGCGTGGGCGGGCAACAGGAGGAAGT
GGTGGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCAACGCCGAAGTCAGTGCCGAACGCTTTCGCCAGGATCTGT
ATTACCGGCTGAATGTCATCGAACTGCGCGTGCCGGCCTTGCGTGAGCGCCGGGATGATATCGAGCCGCTGGCAACCCAT
GTGCTCAAGCGCCTGGCGGCCAGCAGCGGACAACCCGCGGCCAGGCTGCACCCACAGGCCCTGGACACCCTCAAGGGCTA
CCGCTTTCCCGGAAACGTGCGGGAACTGGAGAACATGCTCGAGCGGGCCTATACCCTGTGTGAAAACGACCAGATCGAAG
CCAGTGACCTGCGCCTGGCAGAAACGCCATGCAAGACGGCCGAAGCAGGTGAACCGAGCCTGGCGCAGATCGACAACCTG
GAGGACTACCTGGAGAGCATCGAGCGCAAGCTGATCCTCCAGGCCCTGGAGGAGACACGCTGGAACCGTACGGCGGCGGC
CCAGCGGCTGAGCCTGTCATTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	81.757	99.329	0.812
pilR	Acinetobacter baumannii strain A118	47.93	100	0.492