Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU752_RS05260 Genome accession   NZ_CP077093
Coordinates   1180628..1182217 (-) Length   529 a.a.
NCBI ID   WP_186682717.1    Uniprot ID   A0A9E6PMX8
Organism   Pseudomonas vanderleydeniana strain RW8P3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175628..1187217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU752_RS05245 (HU752_005245) - 1177600..1177998 (+) 399 WP_186682710.1 type IV pilin protein -
  HU752_RS05250 (HU752_005250) thiO 1178048..1179151 (+) 1104 WP_186682712.1 glycine oxidase ThiO -
  HU752_RS05255 (HU752_005255) pilR 1179282..1180625 (-) 1344 WP_186682715.1 sigma-54 dependent transcriptional regulator Regulator
  HU752_RS05260 (HU752_005260) pilS 1180628..1182217 (-) 1590 WP_186682717.1 PAS domain-containing sensor histidine kinase Regulator
  HU752_RS05265 (HU752_005265) - 1182207..1182440 (-) 234 WP_186682719.1 PP0621 family protein -
  HU752_RS05270 (HU752_005270) - 1182574..1183590 (-) 1017 WP_186682721.1 outer membrane protein assembly factor BamD -
  HU752_RS05275 (HU752_005275) rluD 1183741..1184703 (+) 963 WP_186682723.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU752_RS05280 (HU752_005280) pgeF 1184700..1185425 (+) 726 WP_186682725.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 59121.12 Da        Isoelectric Point: 7.9344

>NTDB_id=579135 HU752_RS05260 WP_186682717.1 1180628..1182217(-) (pilS) [Pseudomonas vanderleydeniana strain RW8P3]
MPTETFSLGGAQAQRLLRLYNLYRLSIGIALVLLISSRLDDKLLELTDGELFRTGSWIYLILNILVVVLLENPRRQAQVF
SLALADAVMLSGLFYAAGGPPSGIGNLLIASVAISNVLLRSRMGLLIAAISASGIIYLTFYLSFSRPAAANYYVQAGLLG
VLCFAASFLVQGLTRLLDVSETLAEQRASDVTKLEKLNALILQRMHTGILVLDAEHRVQLANQSVLTLLGQEHLLGRLLE
NHSPELIASLRLWQSNPTLRPQSLKVAGSSTVLQPSFIALQRGERQQTLVFLEDQSKIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLLESEELHGPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQVLDLSPWLQAFVRDWRERAAPN
QQLHLRIEYDWLKTHADPQQMSQVLNNLLENGLRYSAQLHEQAEVWLTLSREHRNDLPTLEILDNGPGVAPEQLQHLFEP
FFTTESQGTGLGLYLSRELCESNQARLDYSRRQGGSCFRITFAHIRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579135 HU752_RS05260 WP_186682717.1 1180628..1182217(-) (pilS) [Pseudomonas vanderleydeniana strain RW8P3]
GTGCCCACTGAGACCTTCAGTCTCGGTGGAGCCCAGGCGCAGCGCCTGCTGCGACTCTATAACCTCTATCGCTTGAGCAT
CGGCATCGCCCTGGTCCTGCTGATTTCCAGCCGGCTGGACGACAAGTTGCTGGAGCTGACCGACGGCGAGCTGTTTCGCA
CCGGCAGCTGGATCTACCTGATCCTGAACATCCTGGTGGTGGTGCTGCTGGAGAACCCCAGGCGCCAGGCCCAGGTCTTC
AGCCTCGCGCTGGCCGATGCGGTGATGCTGTCCGGCCTGTTCTATGCGGCCGGTGGCCCGCCGAGCGGTATCGGCAACCT
GCTGATCGCTTCGGTCGCCATCAGCAACGTGCTGCTGCGCAGCCGTATGGGTCTGCTGATTGCAGCCATTTCGGCCAGCG
GCATCATCTACCTGACCTTCTACCTGAGCTTCAGCCGCCCGGCGGCCGCCAACTACTATGTCCAGGCCGGGCTGCTCGGC
GTTCTGTGCTTTGCCGCCTCGTTCCTGGTTCAGGGGCTGACCCGCCTGCTGGACGTCAGCGAGACCCTGGCCGAGCAGCG
CGCCAGCGACGTGACCAAGCTGGAAAAGCTCAACGCCCTGATCCTGCAACGCATGCACACCGGCATCCTGGTGCTGGACG
CCGAGCACCGCGTGCAACTGGCCAACCAGAGCGTCCTGACGCTGCTGGGCCAGGAGCACCTGCTCGGACGACTGCTCGAG
AACCATTCTCCCGAGCTGATCGCCAGCCTGCGGCTGTGGCAAAGCAACCCGACACTGCGCCCGCAAAGCCTGAAAGTCGC
CGGCAGCAGCACCGTCCTGCAGCCCAGCTTCATCGCCCTGCAACGCGGCGAACGACAGCAGACACTGGTTTTCCTCGAAG
ATCAGTCGAAAATCGCCCAACAGGCCCAACAACTCAAGCTCGCCGCACTGGGCCGGCTGACCGCCGGGATCGCCCACGAG
ATCCGCAACCCACTGGGCGCCATCAGCCATGCCGCCCAGTTGCTGCTGGAGTCGGAGGAACTGCACGGTCCCGATCGGCG
TCTCACGCAAATCATCCAGGACCAGTCCAAGCGCATGAATCTGGTGATCGAGAACGTGCTGCAGCTGTCGCGACGACGCC
AGGCCGAGCCCCAGGTGCTTGACCTGAGCCCCTGGCTGCAAGCCTTTGTCCGGGATTGGCGCGAGAGAGCTGCCCCCAAC
CAGCAACTGCATCTGCGGATAGAGTACGACTGGCTGAAAACCCACGCCGACCCGCAACAGATGAGCCAGGTGCTGAACAA
CCTGCTGGAAAACGGCCTGCGCTACAGCGCCCAGCTACATGAGCAGGCCGAGGTCTGGCTGACACTGTCGCGCGAGCACA
GGAATGACCTGCCGACGCTGGAGATCCTGGACAATGGCCCCGGCGTCGCACCGGAGCAGCTGCAGCATCTGTTCGAGCCT
TTCTTCACCACCGAAAGCCAGGGTACGGGCCTGGGCCTGTACCTGTCCCGCGAGTTATGTGAAAGCAACCAGGCCCGCCT
AGACTATTCAAGGCGCCAAGGCGGCAGTTGCTTTCGCATCACCTTCGCTCACATACGCAAACAGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.453

100

0.626