Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HU724_RS24175 Genome accession   NZ_CP077092
Coordinates   5367516..5368862 (+) Length   448 a.a.
NCBI ID   WP_133339061.1    Uniprot ID   -
Organism   Pseudomonas iranensis strain SWRI54     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5362516..5373862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU724_RS24150 (HU724_024150) pgeF 5362731..5363453 (-) 723 WP_186569371.1 peptidoglycan editing factor PgeF -
  HU724_RS24155 (HU724_024155) rluD 5363450..5364412 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU724_RS24160 (HU724_024160) - 5364564..5365580 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  HU724_RS24165 (HU724_024165) - 5365707..5365940 (+) 234 WP_016773138.1 PP0621 family protein -
  HU724_RS24170 (HU724_024170) pilS 5365930..5367519 (+) 1590 WP_186569372.1 PAS domain-containing sensor histidine kinase Regulator
  HU724_RS24175 (HU724_024175) pilR 5367516..5368862 (+) 1347 WP_133339061.1 sigma-54 dependent transcriptional regulator Regulator
  HU724_RS24180 (HU724_024180) thiO 5368955..5370055 (-) 1101 WP_186569373.1 glycine oxidase ThiO -
  HU724_RS24185 (HU724_024185) - 5370112..5370513 (-) 402 WP_186569374.1 type IV pilin protein -
  HU724_RS24190 (HU724_024190) - 5370529..5373618 (-) 3090 WP_186569375.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50204.50 Da        Isoelectric Point: 6.3600

>NTDB_id=579120 HU724_RS24175 WP_133339061.1 5367516..5368862(+) (pilR) [Pseudomonas iranensis strain SWRI54]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRRQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=579120 HU724_RS24175 WP_133339061.1 5367516..5368862(+) (pilR) [Pseudomonas iranensis strain SWRI54]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAAACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCAATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAGGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCCCGCCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCGATTCCATCGGAGCTGATGGAAAGCGAGTTCTTCGGTCACCGCAAAGGCA
GCTTTACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACTGTGGTCGACGTACGCATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAGCGTTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTGGAACGCGCGCACACCTTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAATTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504