Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU724_RS24170 Genome accession   NZ_CP077092
Coordinates   5365930..5367519 (+) Length   529 a.a.
NCBI ID   WP_186569372.1    Uniprot ID   -
Organism   Pseudomonas iranensis strain SWRI54     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5360930..5372519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU724_RS24150 (HU724_024150) pgeF 5362731..5363453 (-) 723 WP_186569371.1 peptidoglycan editing factor PgeF -
  HU724_RS24155 (HU724_024155) rluD 5363450..5364412 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU724_RS24160 (HU724_024160) - 5364564..5365580 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  HU724_RS24165 (HU724_024165) - 5365707..5365940 (+) 234 WP_016773138.1 PP0621 family protein -
  HU724_RS24170 (HU724_024170) pilS 5365930..5367519 (+) 1590 WP_186569372.1 PAS domain-containing sensor histidine kinase Regulator
  HU724_RS24175 (HU724_024175) pilR 5367516..5368862 (+) 1347 WP_133339061.1 sigma-54 dependent transcriptional regulator Regulator
  HU724_RS24180 (HU724_024180) thiO 5368955..5370055 (-) 1101 WP_186569373.1 glycine oxidase ThiO -
  HU724_RS24185 (HU724_024185) - 5370112..5370513 (-) 402 WP_186569374.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58614.32 Da        Isoelectric Point: 6.8632

>NTDB_id=579119 HU724_RS24170 WP_186569372.1 5365930..5367519(+) (pilS) [Pseudomonas iranensis strain SWRI54]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQMHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579119 HU724_RS24170 WP_186569372.1 5365930..5367519(+) (pilS) [Pseudomonas iranensis strain SWRI54]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCATCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGACCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATTCGTCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAGGTGGTCAGCCTGGAGGCGTTGAATGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTACTCGACG
AACAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAT
GAATATTCGCCAGCACTGGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCCTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCCCTTGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAACGAGCGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGTTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCGCAAATGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCGG
ACAGTCAGTTGGCGGTGCTTGAGGTCCAAGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTCTTTGAACCC
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597