Detailed information NTG0579113

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU724_RS20895
• Genome accession: NZ_CP077092
• Coordinates: 4650876..4653110 (-)
• Length: 744 a.a.
• NCBI ID: WP_186567745.1
• Uniprot ID: -
• Organism: Pseudomonas iranensis strain SWRI54
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4645876..4658110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU724_RS20860 (HU724_020860)	murB	4646254..4647273 (-)	1020	WP_186567747.1	UDP-N-acetylmuramate dehydrogenase	-
HU724_RS20865 (HU724_020865)	-	4647270..4647734 (-)	465	WP_186567746.1	low molecular weight protein-tyrosine-phosphatase	-
HU724_RS20870 (HU724_020870)	kdsB	4647734..4648498 (-)	765	WP_071173223.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU724_RS20875 (HU724_020875)	-	4648495..4648680 (-)	186	WP_003179363.1	Trm112 family protein	-
HU724_RS20880 (HU724_020880)	lpxK	4648704..4649714 (-)	1011	WP_133339569.1	tetraacyldisaccharide 4'-kinase	-
HU724_RS20885 (HU724_020885)	-	4649714..4650142 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
HU724_RS20890 (HU724_020890)	exbB	4650139..4650774 (-)	636	WP_174823890.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU724_RS20895 (HU724_020895)	comA	4650876..4653110 (-)	2235	WP_186567745.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU724_RS20900 (HU724_020900)	-	4653246..4653764 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
HU724_RS20905 (HU724_020905)	-	4653905..4654684 (-)	780	WP_039760202.1	ABC transporter permease	-
HU724_RS20910 (HU724_020910)	-	4654681..4655613 (-)	933	WP_016771010.1	ABC transporter ATP-binding protein	-
HU724_RS20915 (HU724_020915)	-	4655747..4656370 (-)	624	WP_076563819.1	glutathione S-transferase family protein	-
HU724_RS20920 (HU724_020920)	-	4656414..4657073 (-)	660	WP_071173232.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81520.48 Da
• Isoelectric Point: 9.4957

>NTDB_id=579113 HU724_RS20895 WP_186567745.1 4650876..4653110(-) (comA) [Pseudomonas iranensis strain SWRI54]
MRTGMMALAVGLLAPVLLPALPPVGLLAVLPVVALMLLPFRSYPLACLLFGFTWACVGAQWALNDRLPPSLDGKTRWLEG
RVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYML
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERVEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGDRVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVAGGVQVHRVVSGDQPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=579113 HU724_RS20895 WP_186567745.1 4650876..4653110(-) (comA) [Pseudomonas iranensis strain SWRI54]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTATTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGCAGTGCTGCCAGTGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCATGTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTGAATGACCGCTTGCCACCGAGTCTGGACGGAAAAACCCGTTGGCTTGAAGGG
CGAGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCGTCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGAGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCACAAGGCCGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGTTTGCTGGCGGCGGTGATGTATATGCTG
GTCGCCGGGCTGGCGCGTTACGGATTGTGGCCATTGCGCTGGCCTTGGTTGCCGTGGGCGTGTGGCCTGGCCTTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGTTTCGACGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCATCTTGGTGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTATTGCTGGCGCTGAGCT
TGCCGATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTACCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTTGGCACGCTATTGCTGCCCGTGCCTTATGTCGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCTGCCGCCATTCCATGGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGAGGCGTGCCAATGCGACCGTTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAGTAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGTCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGACCGAGTGGTATTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTGGCGGGTGGAGTGCAAGTACACCGCGTCGTCAGTGGCGACCAGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCTTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCAGCCGATGACAGCA
ACCAGCGCTCCTGTGTCTTGCAGATCGAGGCCAACGGCGAACGCCTGCTGCTTACCGGCGACATCGACACTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGTCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAGGGCTTGCGTATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.309	96.64	0.602
comA	Ralstonia pseudosolanacearum GMI1000	35.733	100	0.374