Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU724_RS20890 Genome accession   NZ_CP077092
Coordinates   4650139..4650774 (-) Length   211 a.a.
NCBI ID   WP_174823890.1    Uniprot ID   -
Organism   Pseudomonas iranensis strain SWRI54     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4645139..4655774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU724_RS20855 (HU724_020855) - 4645534..4646004 (-) 471 WP_039760186.1 (2Fe-2S)-binding protein -
  HU724_RS20860 (HU724_020860) murB 4646254..4647273 (-) 1020 WP_186567747.1 UDP-N-acetylmuramate dehydrogenase -
  HU724_RS20865 (HU724_020865) - 4647270..4647734 (-) 465 WP_186567746.1 low molecular weight protein-tyrosine-phosphatase -
  HU724_RS20870 (HU724_020870) kdsB 4647734..4648498 (-) 765 WP_071173223.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU724_RS20875 (HU724_020875) - 4648495..4648680 (-) 186 WP_003179363.1 Trm112 family protein -
  HU724_RS20880 (HU724_020880) lpxK 4648704..4649714 (-) 1011 WP_133339569.1 tetraacyldisaccharide 4'-kinase -
  HU724_RS20885 (HU724_020885) - 4649714..4650142 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  HU724_RS20890 (HU724_020890) exbB 4650139..4650774 (-) 636 WP_174823890.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU724_RS20895 (HU724_020895) comA 4650876..4653110 (-) 2235 WP_186567745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU724_RS20900 (HU724_020900) - 4653246..4653764 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  HU724_RS20905 (HU724_020905) - 4653905..4654684 (-) 780 WP_039760202.1 ABC transporter permease -
  HU724_RS20910 (HU724_020910) - 4654681..4655613 (-) 933 WP_016771010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22899.03 Da        Isoelectric Point: 6.8770

>NTDB_id=579112 HU724_RS20890 WP_174823890.1 4650139..4650774(-) (exbB) [Pseudomonas iranensis strain SWRI54]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMSTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579112 HU724_RS20890 WP_174823890.1 4650139..4650774(-) (exbB) [Pseudomonas iranensis strain SWRI54]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTTGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAGTTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATCCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCAGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCTGGCATGAGCACCAATGCCTCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCAGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858