Detailed information NTG0579095

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HU739_RS24920
• Genome accession: NZ_CP077091
• Coordinates: 5685943..5687289 (+)
• Length: 448 a.a.
• NCBI ID: WP_186546885.1
• Uniprot ID: -
• Organism: Pseudomonas hamedanensis strain SWRI65
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5680943..5692289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU739_RS24895 (HU739_024895)	pgeF	5681148..5681870 (-)	723	WP_186546889.1	peptidoglycan editing factor PgeF	-
HU739_RS24900 (HU739_024900)	rluD	5681867..5682829 (-)	963	WP_186546888.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HU739_RS24905 (HU739_024905)	-	5682981..5683997 (+)	1017	WP_186532466.1	outer membrane protein assembly factor BamD	-
HU739_RS24910 (HU739_024910)	-	5684125..5684367 (+)	243	WP_186546887.1	PP0621 family protein	-
HU739_RS24915 (HU739_024915)	pilS	5684357..5685946 (+)	1590	WP_186546886.1	PAS domain-containing sensor histidine kinase	Regulator
HU739_RS24920 (HU739_024920)	pilR	5685943..5687289 (+)	1347	WP_186546885.1	sigma-54 dependent transcriptional regulator	Regulator
HU739_RS24925 (HU739_024925)	thiO	5687385..5688485 (-)	1101	WP_186546884.1	glycine oxidase ThiO	-
HU739_RS24930 (HU739_024930)	-	5688542..5688943 (-)	402	WP_186546883.1	type IV pilin protein	-
HU739_RS24935 (HU739_024935)	-	5688959..5692048 (-)	3090	WP_186546882.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50178.56 Da
• Isoelectric Point: 6.9119

>NTDB_id=579095 HU739_RS24920 WP_186546885.1 5685943..5687289(+) (pilR) [Pseudomonas hamedanensis strain SWRI65]
MTTSPRQKILIVDDEPDIRELLEITLGRMKLDTLSARNLGEAQALLQRERFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPVAGGASSPIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAQQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSIGGQQETVVDVRILSATHKDLDAQVSAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHVLKRLARDTGQPVASLHPQALESLKNYRFPGNVRELENVLERAHTLCENRIIESQDLRLSEGNCAAEGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=579095 HU739_RS24920 WP_186546885.1 5685943..5687289(+) (pilR) [Pseudomonas hamedanensis strain SWRI65]
TTGACTACGAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACACTGGG
ACGGATGAAACTCGATACCCTCAGTGCGCGCAACCTGGGTGAGGCCCAGGCGCTGCTGCAGCGTGAGCGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACTTGGTGCAGCACATCCAGCAACGTTATCCACAGCTCCCG
GTGGCGATGATCACCGCCTATGGCAGTCTGGAGACTGCGATCAACGCGCTGAAGGCCGGGGCCTTCGACTTTCTGACCAA
GCCGGTCGACCTCACGCGCCTGCGCGAACTGGTCGCCACGGCCCTGCGCATGCCGGTGGCGGGCGGCGCGAGCAGCCCGA
TCGACCGACGCCTGCTCGGCGACTCGTTGCCCATGCGCAACCTGCGCAAGCAGATCGACAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGTGAATCGGGCAGCGGCAAGGAACTGGTCGCACGCCTGATTCATGAGCAGGGCCCGCGCGCCCA
GCAGCCCTTTGTCCCGGTCAATTGCGGGGCGATTCCCTCGGAGTTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTTACCGGTGCAGTGGAGGACAAACCGGGGCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATCTGCCGTTATCGATGCAGGTCAAACTGCTGCGGGCGATTCAGGAAAAGGCCGTGCGCAGCATCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCAGCGCGACGCACAAGGACCTTGATGCGCAGGTCAGCGCCGAACGGTTTCGCCAGG
ACCTTTATTACCGATTGAACGTGATCGAACTGCGCGTACCCTCTCTGCGCGAGCGCCGCGATGACATTGAAGTGCTGGCC
GCGCATGTCCTCAAGCGATTGGCCAGGGACACCGGCCAGCCTGTCGCGAGCCTGCATCCGCAGGCGCTGGAAAGCCTGAA
GAATTACCGCTTCCCCGGGAACGTGCGGGAACTGGAGAACGTACTTGAACGGGCGCATACCCTGTGCGAGAACCGTATCA
TCGAATCTCAGGACTTGCGGCTGAGCGAAGGCAATTGCGCGGCGGAGGGTGCGATTGCCGACCTTACGCAGATCGACAAC
CTGGAAGATTATCTGGAAAACGTCGAACGCAAGCTGATCCTGCAGGCATTGGAGGAGACACGCTGGAACCGCACGGCCGC
GGCGCAGCGCTTGAGTCTTTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507