Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU739_RS24915 Genome accession   NZ_CP077091
Coordinates   5684357..5685946 (+) Length   529 a.a.
NCBI ID   WP_186546886.1    Uniprot ID   A0A9E6TFX3
Organism   Pseudomonas hamedanensis strain SWRI65     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5679357..5690946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU739_RS24895 (HU739_024895) pgeF 5681148..5681870 (-) 723 WP_186546889.1 peptidoglycan editing factor PgeF -
  HU739_RS24900 (HU739_024900) rluD 5681867..5682829 (-) 963 WP_186546888.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU739_RS24905 (HU739_024905) - 5682981..5683997 (+) 1017 WP_186532466.1 outer membrane protein assembly factor BamD -
  HU739_RS24910 (HU739_024910) - 5684125..5684367 (+) 243 WP_186546887.1 PP0621 family protein -
  HU739_RS24915 (HU739_024915) pilS 5684357..5685946 (+) 1590 WP_186546886.1 PAS domain-containing sensor histidine kinase Regulator
  HU739_RS24920 (HU739_024920) pilR 5685943..5687289 (+) 1347 WP_186546885.1 sigma-54 dependent transcriptional regulator Regulator
  HU739_RS24925 (HU739_024925) thiO 5687385..5688485 (-) 1101 WP_186546884.1 glycine oxidase ThiO -
  HU739_RS24930 (HU739_024930) - 5688542..5688943 (-) 402 WP_186546883.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58567.35 Da        Isoelectric Point: 6.3901

>NTDB_id=579094 HU739_RS24915 WP_186546886.1 5684357..5685946(+) (pilS) [Pseudomonas hamedanensis strain SWRI65]
MIAEAAPADSKQAQRLLRLYHLYRLSIGITLVLLISSDMDNRLLTSANDELLRGGSWLYLVLNILLVVFLENTRRPAQLL
SLALVDVLLLGGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIAALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRVEVSETLAEQRASEVIGLEALNALILQRMRTGILVLDEARRIQLANHSAQTLLAHTHLQGQLID
DCAPALVDRLQLWRNNPTLRPQSLKVAGNGLELQPSFIALDQRPNQQILVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSEPQRLDLKPWLEQFVAESREHATEL
QQIHLRIDSGDFNTLMDPDQLTQILDNLLRNGWRHSALLHDQAEVWMTLFIDPDSQLAVLQVRDNGPGVPLAEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579094 HU739_RS24915 WP_186546886.1 5684357..5685946(+) (pilS) [Pseudomonas hamedanensis strain SWRI65]
GTGATCGCTGAGGCCGCCCCCGCCGACAGTAAACAGGCGCAGCGCCTGCTGCGTCTTTATCATCTTTACCGCCTGAGCAT
CGGCATTACGCTGGTGCTGCTGATCTCCAGCGACATGGACAACCGTCTGCTGACGTCTGCCAACGACGAACTGTTGCGCG
GCGGCAGCTGGTTGTACCTGGTGCTCAATATCCTGCTGGTGGTGTTTCTGGAGAACACCCGGCGTCCGGCTCAATTGCTC
AGCCTCGCGCTGGTCGACGTCCTGCTGCTCGGTGGTCTGTTCTATGCAGCAGGCGGTGTGGCCAGTGCGCTGGGCAATTT
GTTGATCGTCTCGGTGGCGATCAGCAATACCTTGCTGCGCCGGCGCATTGGCTTGCTGATCGCGGCCATTGCTGCCCTGG
GCATTGTCGGTTTGAGTTTCCTGCTGAGTTTCAGCCACCCGTTGAGCGCCAACGAGTACCTGCAAGCAGGCACCCTCGGT
GCGTTATGTTTCGCGGCATCACTATTGGTACAGGGTCTGATCCGCCGCGTTGAGGTCAGCGAAACACTGGCCGAGCAACG
TGCCAGCGAAGTGATTGGTCTGGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTTGTGCTCGACG
AGGCACGCCGCATACAACTGGCCAACCACAGCGCCCAGACCTTGCTCGCGCATACGCACCTTCAGGGGCAGTTGATCGAC
GACTGCGCGCCGGCCCTGGTCGATCGCCTGCAGCTGTGGAGGAATAACCCGACGCTGCGCCCGCAAAGCCTGAAGGTGGC
CGGTAACGGCCTCGAACTGCAGCCGAGCTTCATCGCCCTCGATCAGCGCCCGAACCAGCAGATTCTGGTGTTTCTCGAAG
ACCTGGCACAGATCGCCCAACAGGCCCAGCAGTTGAAGCTGGCCGCGCTTGGACGACTGACCGCCGGGATATCCCACGAA
ATCCGCAACCCGCTGGGCGCAATCAGCCATGCCGCACAGCTCTTGGCCGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGTGAACCGCAACGGCTGGACCTCAAGCCATGGCTGGAACAGTTCGTCGCCGAAAGCCGCGAACACGCGACCGAACTT
CAGCAGATTCATTTGCGGATCGATTCCGGCGACTTCAATACCCTGATGGACCCCGACCAGCTCACTCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGTCACAGTGCCTTGCTGCATGATCAGGCCGAGGTCTGGATGACCCTGTTCATCGACCCGG
ACAGCCAGTTGGCGGTGCTGCAAGTGCGGGACAACGGCCCCGGCGTGCCGCTCGCCGAACAGGCGCATCTGTTCGAACCG
TTCTTTACTACCAGTAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTTCAGTCACGCCAAGACGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601