Detailed information NTG0579087

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU739_RS21490
• Genome accession: NZ_CP077091
• Coordinates: 4924708..4926942 (-)
• Length: 744 a.a.
• NCBI ID: WP_186546952.1
• Uniprot ID: A0A9E6NXU8
• Organism: Pseudomonas hamedanensis strain SWRI65
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4919708..4931942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU739_RS21455 (HU739_021455)	murB	4920087..4921106 (-)	1020	WP_186546957.1	UDP-N-acetylmuramate dehydrogenase	-
HU739_RS21460 (HU739_021460)	-	4921103..4921567 (-)	465	WP_186546956.1	low molecular weight protein-tyrosine-phosphatase	-
HU739_RS21465 (HU739_021465)	kdsB	4921567..4922331 (-)	765	WP_186546955.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU739_RS21470 (HU739_021470)	-	4922328..4922513 (-)	186	WP_003179363.1	Trm112 family protein	-
HU739_RS21475 (HU739_021475)	lpxK	4922536..4923546 (-)	1011	WP_186546954.1	tetraacyldisaccharide 4'-kinase	-
HU739_RS21480 (HU739_021480)	-	4923546..4923974 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
HU739_RS21485 (HU739_021485)	exbB	4923971..4924606 (-)	636	WP_186546953.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU739_RS21490 (HU739_021490)	comA	4924708..4926942 (-)	2235	WP_186546952.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU739_RS21495 (HU739_021495)	-	4927078..4927596 (+)	519	WP_186546951.1	DUF2062 domain-containing protein	-
HU739_RS21500 (HU739_021500)	-	4927743..4928522 (-)	780	WP_186546950.1	ABC transporter permease	-
HU739_RS21505 (HU739_021505)	-	4928519..4929451 (-)	933	WP_186546949.1	ABC transporter ATP-binding protein	-
HU739_RS21510 (HU739_021510)	-	4929584..4930207 (-)	624	WP_186546948.1	glutathione S-transferase family protein	-
HU739_RS21515 (HU739_021515)	-	4930251..4930910 (-)	660	WP_186546947.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81419.54 Da
• Isoelectric Point: 9.9448

>NTDB_id=579087 HU739_RS21490 WP_186546952.1 4924708..4926942(-) (comA) [Pseudomonas hamedanensis strain SWRI65]
MRTGMMALAVGLLAPVFMPALPPVGLLVVLPVVALMLLPFRSYPLACFLFGFTWACVGALWALNDRLPPRLDGETRWVEG
RVVGLPQSSDGVVRFELADARSRHATLPSLMRLAWYAGPPVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLTPARNAWRDSLRQRLLAVDAQGREGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAAVVYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLILTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALAVGGLGAVLLLLPRGVPLRPLGWPLMLLLV
LPPREPIEEGQADIWQLDVGQGLAILIRTRHHAVLYDAGPRVGDFDLGERVVLPALRKLNVQKLDLMLLSHADADHAGGA
RAVRRGLPVARIVSGDPLNLPAELNAAACESGEQWQWDGVQFQLWQWSDADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLGSPLAVPTQWLQSPHHGSRSSSSMALLNALQAQSVLISRGHGNAFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GRFKPPWTMRQQRRFWRDPPAPGH

Nucleotide

• Length: 2235 bp

>NTDB_id=579087 HU739_RS21490 WP_186546952.1 4924708..4926942(-) (comA) [Pseudomonas hamedanensis strain SWRI65]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTCATGCCGGCGTTGCCGCCGGTCGGTTTGTT
GGTGGTGCTGCCAGTGGTGGCGTTGATGCTGCTGCCCTTTCGCAGCTATCCATTGGCGTGTTTTCTGTTTGGCTTCACCT
GGGCCTGCGTCGGCGCGCTGTGGGCGCTGAACGATCGCTTGCCGCCGCGCCTGGACGGCGAAACCCGCTGGGTCGAAGGG
CGGGTGGTCGGCTTGCCGCAGAGCAGTGACGGCGTGGTGCGTTTCGAGCTGGCCGATGCGCGCTCACGCCATGCAACGCT
GCCGTCGCTGATGCGCCTGGCCTGGTACGCCGGACCGCCGGTGAAAAGCGGTGAGCGCTGGCGCCTGGCGGTGAAGCTGA
AGCGCCCCGGTGGCCTGCTCAATCCAGATGCGTTCGATTATGAGGCCTGGCTGTTGGCGCAGCGCATCGGCGCGACGGGT
ACGATCAAGGACGGCCAACGCCTCACGCCAGCCCGCAATGCCTGGCGCGACAGTCTTCGTCAGCGCTTGCTGGCAGTGGA
TGCACAGGGACGCGAGGGCGCGCTGGCCGCGCTGGTGCTGGGCGATGGTTCCGGTCTCAGCCGCGAGGACTGGCAAACTT
TGCAGGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATTGGTTTGCTCGCGGCCGTGGTGTATCTGCTG
GTCGCCGGACTGGCGCGCTACGGGTTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGCGGTCTGGCATTCGCCGC
AGCGCTTGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGTGTGATGGTGGCGCTGGTGCTGTTAT
GGCGCCTGCGCTTTCGCCATCTCGGTGCATGGTGGCCGTTGTTACTGGCATTCAACGGCGTGTTGTTGCTTGATCCGCTG
GCGAGTCTGCGGCCTGGGTTCTGGCTGTCCTTTGCTGCGGTGGCGGTGCTGATTCTCACCTTCGGCGGGCGGCTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACGCGCGCGCAGTGGTTGATCGCGATCGGGTTGTGCCCGGTGTTGCTGGCCTTGAGCC
TGCCGATCAGTGTGAGCGGGCCGCTGGCGAACCTGCTGGCGGTGCCTTGGGTCAGCCTTGTGGTGCTGCCGCCGGCATTG
CTCGGAACGTTGTTATTGCCTGTGCCCTATGTTGGCGAAGGGCTGCTGTGGCTGGCGGGCGGCCTGATCGACTGGCTGTT
TATCGGGCTTGCGCTGATCGCCGGACAATGGCCGGCGTGGATACCCGCAGCCATTCCATTCTGGGCACTGGCGGTGGGCG
GCCTCGGCGCGGTCTTATTGCTTTTGCCCCGTGGCGTACCGCTGCGCCCATTGGGCTGGCCGCTGATGTTGCTATTGGTG
CTACCGCCCCGAGAACCAATAGAAGAAGGGCAGGCCGATATCTGGCAACTCGACGTCGGCCAAGGTCTTGCCATCCTGAT
TCGCACCCGCCACCACGCGGTTCTGTATGACGCCGGCCCGCGTGTTGGTGATTTTGATCTGGGCGAACGCGTGGTGCTGC
CTGCGCTACGCAAACTCAACGTGCAAAAGCTCGATTTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGCGGTGCC
CGGGCGGTGAGGCGCGGCTTGCCGGTGGCGCGGATCGTCAGCGGCGATCCGCTAAACCTGCCGGCGGAACTGAACGCCGC
AGCCTGTGAAAGTGGCGAGCAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGACGCGGATGACAGCA
ATCAGCGGTCCTGTGTGTTGCAAATCGAGGCCAATGGCGAACGCCTGTTGCTCACCGGCGACATCGACACGCACGCCGAA
CGCGTCCTGCTCGGCAGCCCTCTCGCGGTGCCGACGCAATGGCTGCAATCACCGCATCACGGCAGCCGCAGCTCATCATC
GATGGCCCTGCTAAACGCGCTGCAAGCGCAATCGGTACTGATCTCCCGAGGCCATGGCAATGCCTTCGGTCACCCGCATC
CGACCGTGCTTGCGCGCTATCGCAAGCAAGGCCTGCGCATCTACGACAGCGCCGAGCAGGGCGCCATTCATTTGCAACTG
GGTCGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGACGTTTCTGGCGTGATCCGCCTGCGCCCGGCCATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (25-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.17	96.64	0.601
comA	Ralstonia pseudosolanacearum GMI1000	35.467	100	0.372