Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU739_RS21485 Genome accession   NZ_CP077091
Coordinates   4923971..4924606 (-) Length   211 a.a.
NCBI ID   WP_186546953.1    Uniprot ID   -
Organism   Pseudomonas hamedanensis strain SWRI65     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4918971..4929606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU739_RS21450 (HU739_021450) - 4919369..4919839 (-) 471 WP_186546958.1 (2Fe-2S)-binding protein -
  HU739_RS21455 (HU739_021455) murB 4920087..4921106 (-) 1020 WP_186546957.1 UDP-N-acetylmuramate dehydrogenase -
  HU739_RS21460 (HU739_021460) - 4921103..4921567 (-) 465 WP_186546956.1 low molecular weight protein-tyrosine-phosphatase -
  HU739_RS21465 (HU739_021465) kdsB 4921567..4922331 (-) 765 WP_186546955.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU739_RS21470 (HU739_021470) - 4922328..4922513 (-) 186 WP_003179363.1 Trm112 family protein -
  HU739_RS21475 (HU739_021475) lpxK 4922536..4923546 (-) 1011 WP_186546954.1 tetraacyldisaccharide 4'-kinase -
  HU739_RS21480 (HU739_021480) - 4923546..4923974 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  HU739_RS21485 (HU739_021485) exbB 4923971..4924606 (-) 636 WP_186546953.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU739_RS21490 (HU739_021490) comA 4924708..4926942 (-) 2235 WP_186546952.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU739_RS21495 (HU739_021495) - 4927078..4927596 (+) 519 WP_186546951.1 DUF2062 domain-containing protein -
  HU739_RS21500 (HU739_021500) - 4927743..4928522 (-) 780 WP_186546950.1 ABC transporter permease -
  HU739_RS21505 (HU739_021505) - 4928519..4929451 (-) 933 WP_186546949.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.05 Da        Isoelectric Point: 6.8770

>NTDB_id=579086 HU739_RS21485 WP_186546953.1 4923971..4924606(-) (exbB) [Pseudomonas hamedanensis strain SWRI65]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579086 HU739_RS21485 WP_186546953.1 4923971..4924606(-) (exbB) [Pseudomonas hamedanensis strain SWRI65]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATTTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTTGAACGCTACAT
CAACGCCCTCGGCACCATCGCGGCCATGGCGCCGCTGCTCGGTTTGCTCGGCACCGTGTTGGGCATGATCGATATTTTCA
GTGCGTTCACTGGTTCCGGCATGACCACCAACGCTTCGGTATTGGCGGGCGGTATCTCCAAGGCGCTGATTACCACCGCA
GCAGGCCTGATGGTCGGCATTCCGGCGGTATTCTTCCACCGCTTCCTGCAACGTCGTATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCAATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGACCTCTCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858