Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HU754_RS25715 Genome accession   NZ_CP077090
Coordinates   5824009..5825355 (+) Length   448 a.a.
NCBI ID   WP_186623932.1    Uniprot ID   A0A9E6NNW6
Organism   Pseudomonas zeae strain OE 48.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5819009..5830355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS25690 (HU754_025690) pgeF 5819216..5819938 (-) 723 WP_186623931.1 peptidoglycan editing factor PgeF -
  HU754_RS25695 (HU754_025695) rluD 5819935..5820897 (-) 963 WP_034153865.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU754_RS25700 (HU754_025700) - 5821049..5822065 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  HU754_RS25705 (HU754_025705) - 5822191..5822433 (+) 243 WP_093434843.1 PP0621 family protein -
  HU754_RS25710 (HU754_025710) pilS 5822423..5824012 (+) 1590 WP_095048692.1 PAS domain-containing sensor histidine kinase Regulator
  HU754_RS25715 (HU754_025715) pilR 5824009..5825355 (+) 1347 WP_186623932.1 sigma-54 dependent transcriptional regulator Regulator
  HU754_RS25720 (HU754_025720) thiO 5825487..5826587 (-) 1101 WP_186623934.1 glycine oxidase ThiO -
  HU754_RS25725 (HU754_025725) - 5826645..5827046 (-) 402 WP_186623936.1 type IV pilin protein -
  HU754_RS25730 (HU754_025730) - 5827062..5830151 (-) 3090 WP_186623938.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50093.44 Da        Isoelectric Point: 6.5130

>NTDB_id=579061 HU754_RS25715 WP_186623932.1 5824009..5825355(+) (pilR) [Pseudomonas zeae strain OE 48.2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=579061 HU754_RS25715 WP_186623932.1 5824009..5825355(+) (pilR) [Pseudomonas zeae strain OE 48.2]
TTGAATACGAGCCCACGGCAAAAAATTCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCACGCAATCTGGCTGAAGCCCAGGCGCTGCTGAACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACGGGGCTGGAGCTGGTGCAGCACATTCAGCAACGCTATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTCACTCGTTTGCGCGAACTGGTCGGTACAGCCCTGCGCATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TCGATCGGCGCTTGCTCGGCGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGTGGCGAATCGGGCAGTGGCAAGGAACTGGTTGCGCGGCTGATCCATGAACAAGGGCCGCGCGCCGG
CCAGCCGTTCGTGCCGGTGAACTGTGGGGCAATTCCTTCCGAGCTGATGGAAAGCGAGTTCTTCGGACATCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTGTTTCAGGCAGCCCATGGCGGTACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACACACAAGGATCTCGACGCGGAGGTCGCGGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGCCCTTGCGAGAGCGGCGCGATGACATCGAAGTGTTGGCG
GCGCACATGCTCAAGCGTTTGGCCAAGGACACCGGCCAACCGGCAGCGCGTTTACATCCTCAGGCGTTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGGAATGTGCGGGAGTTGGAAAACGTGCTTGAGCGGGCACACACCTTGTGTGAGAACCGCACGA
TCGAGGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCGGACGGCGGTATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTTGAGAGGAAGCTGATCTTGCAGGCGCTGGAAGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.361

98.884

0.795
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502