Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU754_RS25710 Genome accession   NZ_CP077090
Coordinates   5822423..5824012 (+) Length   529 a.a.
NCBI ID   WP_095048692.1    Uniprot ID   A0A9E6NNR5
Organism   Pseudomonas zeae strain OE 48.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5817423..5829012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS25690 (HU754_025690) pgeF 5819216..5819938 (-) 723 WP_186623931.1 peptidoglycan editing factor PgeF -
  HU754_RS25695 (HU754_025695) rluD 5819935..5820897 (-) 963 WP_034153865.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU754_RS25700 (HU754_025700) - 5821049..5822065 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  HU754_RS25705 (HU754_025705) - 5822191..5822433 (+) 243 WP_093434843.1 PP0621 family protein -
  HU754_RS25710 (HU754_025710) pilS 5822423..5824012 (+) 1590 WP_095048692.1 PAS domain-containing sensor histidine kinase Regulator
  HU754_RS25715 (HU754_025715) pilR 5824009..5825355 (+) 1347 WP_186623932.1 sigma-54 dependent transcriptional regulator Regulator
  HU754_RS25720 (HU754_025720) thiO 5825487..5826587 (-) 1101 WP_186623934.1 glycine oxidase ThiO -
  HU754_RS25725 (HU754_025725) - 5826645..5827046 (-) 402 WP_186623936.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58526.06 Da        Isoelectric Point: 6.5576

>NTDB_id=579060 HU754_RS25710 WP_095048692.1 5822423..5824012(+) (pilS) [Pseudomonas zeae strain OE 48.2]
MIAEATHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEARRVQLANHSAQTLLAQSHLQGHLID
DYSTALVDRLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPHQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVVESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLSLFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579060 HU754_RS25710 WP_095048692.1 5822423..5824012(+) (pilS) [Pseudomonas zeae strain OE 48.2]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGCTTGAGTAT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTGGTGTTCCTCGAGAACACCCGACGGCCAGCGCAGCTGTTC
AGTCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTTTGTTCTTTGCTGCGGGCGGCGTCGGTAGTGCGCTGGGCAATTT
GCTGATTGTCTCTGTGGCGATCAGCAACACCCTGCTACGGCGGCGCATCGGGCTATTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGCTCGAGCTTCCTGCTCGGCTTCAACCATCCCCTTAGCGCCAATGAATACTTGCAGGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGACTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGGCGCGGCGAGTGCAACTGGCCAATCACAGCGCACAAACCCTGCTCGCGCAGTCGCACCTTCAGGGGCATTTGATCGAT
GACTATTCCACGGCGCTGGTCGATCGCCTGCAACTGTGGCTGAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTCGAACAAAGCCCCCACCAACAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCCCAGCAACTTAAGCTCGCCGCACTCGGGCGCTTGACCGCCGGCATCGCCCACGAG
ATTCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCTTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGTCGAGAGTCGTGAACAGGCCAGCGAACGC
CAGCAGATTCACCTGCGGATCAATTCGGGAGACTTCACCACGCTGATGGACCCGAACCAGCTCACGCAAATTCTCGACAA
TCTGCTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAGGCCGAAGTCTGGCTCTCGTTGTTCAGTGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAGTCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601