Detailed information NTG0579053

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU754_RS22055
• Genome accession: NZ_CP077090
• Coordinates: 5007521..5009755 (-)
• Length: 744 a.a.
• NCBI ID: WP_186620449.1
• Uniprot ID: A0A9E6TA70
• Organism: Pseudomonas zeae strain OE 48.2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5002521..5014755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU754_RS22020 (HU754_022020)	murB	5002901..5003920 (-)	1020	WP_186620453.1	UDP-N-acetylmuramate dehydrogenase	-
HU754_RS22025 (HU754_022025)	-	5003917..5004381 (-)	465	WP_093435454.1	low molecular weight protein-tyrosine-phosphatase	-
HU754_RS22030 (HU754_022030)	kdsB	5004381..5005145 (-)	765	WP_095048623.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU754_RS22035 (HU754_022035)	-	5005142..5005327 (-)	186	WP_003174668.1	Trm112 family protein	-
HU754_RS22040 (HU754_022040)	lpxK	5005349..5006359 (-)	1011	WP_186620451.1	tetraacyldisaccharide 4'-kinase	-
HU754_RS22045 (HU754_022045)	-	5006359..5006787 (-)	429	WP_093435463.1	biopolymer transporter ExbD	-
HU754_RS22050 (HU754_022050)	exbB	5006784..5007419 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU754_RS22055 (HU754_022055)	comA	5007521..5009755 (-)	2235	WP_186620449.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU754_RS22060 (HU754_022060)	-	5009892..5010410 (+)	519	WP_095048627.1	DUF2062 domain-containing protein	-
HU754_RS22065 (HU754_022065)	-	5010554..5011333 (-)	780	WP_008087860.1	ABC transporter permease	-
HU754_RS22070 (HU754_022070)	-	5011330..5012262 (-)	933	WP_160059025.1	ABC transporter ATP-binding protein	-
HU754_RS22075 (HU754_022075)	-	5012396..5013019 (-)	624	WP_093435475.1	glutathione S-transferase family protein	-
HU754_RS22080 (HU754_022080)	-	5013063..5013722 (-)	660	WP_093435478.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81330.08 Da
• Isoelectric Point: 9.5447

>NTDB_id=579053 HU754_RS22055 WP_186620449.1 5007521..5009755(-) (comA) [Pseudomonas zeae strain OE 48.2]
MRTGMMALAVGLLVAVFMPALPPVWLLLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAGLDGETRWVEG
WVVGLPQNSDGVVRFELAEAHSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLRNPEAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYGL
VAGMARYGLWPLRWPWLPWACGLGFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAGWPLLLAFNAVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLAVLPPAL
LGTVLLPVPFVGAGLLWLAGGLIDGLFHALATIAGHWPAWIAPSIPAWVWAIGSLGAGLLLLPRGVPLRPLGWPLLLLLV
VPPRDQIDEGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPSLRKLSVEKLDLMLLSHADADHAGGA
LAISRGLTVDQVISGDPAGLPAQLNAEACASGQQWQWDGVRFQLWQWADADDSNQRSCVLQIEANGERLLLTGDIDSHAE
RVLLDGPLAVPTQWLQSPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKLGLNIYDSAEQGAIHLQL
GTFRAPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=579053 HU754_RS22055 WP_186620449.1 5007521..5009755(-) (comA) [Pseudomonas zeae strain OE 48.2]
ATGCGCACAGGGATGATGGCGCTCGCAGTCGGTCTGCTGGTCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGTT
GCTGTTGTTGCCGGTCGTGGCTTTGATGCTGCTGCCGTTCCGCAGCTATCCGCTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGGCCGGGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
TGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGCTTCGAATTGGCCGAGGCGCACTCGCGTCATGAAAAACT
GCCATCGCTGATGCGGCTTGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGTTGGCGTTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGATTGCGCAATCCCGAGGCCTTTGACTACGAGGCCTGGCTGCTGGCGCAACGTATTGGCGCCACCGGC
ACGATCAAGGACGGCCAGCGCTTGAGCGAAGCGCGTTGGGCCTGGCGTGACAGTATTCGCCAGCGTTTGCTGAGCGTGGA
TGCGCAGGGGCGAAACGGCGCATTGGCGGCGTTGGTGCTGGGTGACGGCTCGGGGCTCAGTCGTGAGGACTGGCAGACTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGATTGCTGGCGGCGCTGATGTATGGGCTG
GTCGCCGGCATGGCGCGATATGGCCTGTGGCCGCTGCGCTGGCCGTGGCTGCCGTGGGCCTGTGGTCTGGGGTTCGCGGC
AGCACTCGGTTATGGCCTGCTTGCCGGGTTCGACGTGCCAGTGCAGCGCGCCTGCGTGATGGTCGGACTGGTGCTGTTGT
GGCGCCTGCGTTTTCGTCATCTTGGCGCAGGGTGGCCGTTGTTGCTGGCGTTCAACGCTGTGCTGTTGCTGGACCCGCTC
GCCAGTTTGCGTCCGGGTCTGTGGCTCTCGTTTGCGGCGGTGGCGGTGCTGATCTTTACCTTTGGCGGCCGCTTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAGTGGTTGATCGCGATCGGCTTATGTCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGCTTGCCAATTTGCTTGCGGTGCCTTGGGTCAGTCTTGCGGTGTTACCGCCGGCGCTG
CTTGGAACCGTGTTGCTGCCTGTTCCTTTTGTCGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGATGGGTTGTT
TCACGCGCTGGCGACGATTGCCGGGCATTGGCCGGCGTGGATCGCACCCTCGATACCCGCTTGGGTCTGGGCCATTGGCA
GCCTCGGCGCCGGGTTATTACTGTTGCCGCGCGGCGTGCCGCTGCGTCCACTGGGCTGGCCGTTGTTGTTGCTGCTGGTC
GTGCCGCCACGCGATCAGATAGATGAAGGATTGGCCGATATCTGGCAGCTCGATGTCGGCCAAGGCTTGGCCATCCTGAT
CCGGACCCGCCATCACGCGTTGCTCTACGATGCGGGGCCGCGCTTTGGTGAGTTCGACCTCGGCGAGCGTGTGGTGCTGC
CTTCATTGCGCAAACTGAGCGTGGAAAAACTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCT
TTGGCGATCAGCCGGGGTTTGACCGTCGATCAGGTAATCAGCGGTGACCCGGCGGGGCTGCCCGCGCAATTGAACGCCGA
AGCCTGTGCAAGTGGCCAGCAATGGCAATGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCTGACGACAGCA
ATCAGCGTTCCTGTGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGTTGACCGGCGACATCGACAGCCATGCCGAG
CGCGTGCTGCTCGACGGTCCACTGGCCGTGCCGACGCAATGGCTGCAATCGCCCCATCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAACGTCTTGAAACCCGAGTCCGTGCTGATCTCTCGAGGTCATGGCAACTCATTTGGCCATCCACACC
CGACCGTGCTGGCGCGTTATCGCAAACTGGGCCTGAATATTTACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCACCTTCCGGGCACCACGCACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.291	96.237	0.599
comA	Ralstonia pseudosolanacearum GMI1000	31.653	100	0.363