Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU754_RS22050 Genome accession   NZ_CP077090
Coordinates   5006784..5007419 (-) Length   211 a.a.
NCBI ID   WP_042560451.1    Uniprot ID   -
Organism   Pseudomonas zeae strain OE 48.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5001784..5012419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS22015 (HU754_022015) - 5002185..5002655 (-) 471 WP_186620455.1 (2Fe-2S)-binding protein -
  HU754_RS22020 (HU754_022020) murB 5002901..5003920 (-) 1020 WP_186620453.1 UDP-N-acetylmuramate dehydrogenase -
  HU754_RS22025 (HU754_022025) - 5003917..5004381 (-) 465 WP_093435454.1 low molecular weight protein-tyrosine-phosphatase -
  HU754_RS22030 (HU754_022030) kdsB 5004381..5005145 (-) 765 WP_095048623.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU754_RS22035 (HU754_022035) - 5005142..5005327 (-) 186 WP_003174668.1 Trm112 family protein -
  HU754_RS22040 (HU754_022040) lpxK 5005349..5006359 (-) 1011 WP_186620451.1 tetraacyldisaccharide 4'-kinase -
  HU754_RS22045 (HU754_022045) - 5006359..5006787 (-) 429 WP_093435463.1 biopolymer transporter ExbD -
  HU754_RS22050 (HU754_022050) exbB 5006784..5007419 (-) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU754_RS22055 (HU754_022055) comA 5007521..5009755 (-) 2235 WP_186620449.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU754_RS22060 (HU754_022060) - 5009892..5010410 (+) 519 WP_095048627.1 DUF2062 domain-containing protein -
  HU754_RS22065 (HU754_022065) - 5010554..5011333 (-) 780 WP_008087860.1 ABC transporter permease -
  HU754_RS22070 (HU754_022070) - 5011330..5012262 (-) 933 WP_160059025.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=579052 HU754_RS22050 WP_042560451.1 5006784..5007419(-) (exbB) [Pseudomonas zeae strain OE 48.2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579052 HU754_RS22050 WP_042560451.1 5006784..5007419(-) (exbB) [Pseudomonas zeae strain OE 48.2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAACTCGAGCGCTACAT
CAATGCGCTCGGCACTATCGCAGCCATGGCGCCATTACTGGGTCTGCTTGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCGTTCACTGGCTCCGGTATGACCACCAATGCCTCGGTGCTGGCAGGCGGTATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGGTTCCTGCAACGCCGTATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTTGAAGTGGTACAGGGCGACCGTGATGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853