Detailed information NTG0579024

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU718_RS22465
• Genome accession: NZ_CP077089
• Coordinates: 5079425..5081659 (-)
• Length: 744 a.a.
• NCBI ID: WP_186613749.1
• Uniprot ID: -
• Organism: Pseudomonas tensinigenes strain ZA 5.3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5074425..5086659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU718_RS22430 (HU718_022430)	murB	5074805..5075824 (-)	1020	WP_186613756.1	UDP-N-acetylmuramate dehydrogenase	-
HU718_RS22435 (HU718_022435)	-	5075821..5076285 (-)	465	WP_186613754.1	low molecular weight protein-tyrosine-phosphatase	-
HU718_RS22440 (HU718_022440)	kdsB	5076285..5077049 (-)	765	WP_186613752.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU718_RS22445 (HU718_022445)	-	5077046..5077231 (-)	186	WP_003174668.1	Trm112 family protein	-
HU718_RS22450 (HU718_022450)	lpxK	5077253..5078263 (-)	1011	WP_186613750.1	tetraacyldisaccharide 4'-kinase	-
HU718_RS22455 (HU718_022455)	-	5078263..5078691 (-)	429	WP_007908223.1	biopolymer transporter ExbD	-
HU718_RS22460 (HU718_022460)	exbB	5078688..5079323 (-)	636	WP_038364506.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU718_RS22465 (HU718_022465)	comA	5079425..5081659 (-)	2235	WP_186613749.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU718_RS22470 (HU718_022470)	-	5081796..5082314 (+)	519	WP_007908202.1	DUF2062 domain-containing protein	-
HU718_RS22475 (HU718_022475)	-	5082462..5083241 (-)	780	WP_007908200.1	ABC transporter permease	-
HU718_RS22480 (HU718_022480)	-	5083238..5084170 (-)	933	WP_150731190.1	ABC transporter ATP-binding protein	-
HU718_RS22485 (HU718_022485)	-	5084294..5084917 (-)	624	WP_186613747.1	glutathione S-transferase family protein	-
HU718_RS22490 (HU718_022490)	-	5084961..5085620 (-)	660	WP_186613745.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81644.86 Da
• Isoelectric Point: 9.8311

>NTDB_id=579024 HU718_RS22465 WP_186613749.1 5079425..5081659(-) (comA) [Pseudomonas tensinigenes strain ZA 5.3]
MRTGMMALAVGLLAPVFMSALPPVWLMLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAGLDGETRWVEG
RVIGLPQNSDGVVRFELADALSRHEKLPPLMRLAWYGGPPVNSGERWRLAVKLKRAGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLEVDAQGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAALMYML
VAGLARFGLWPLRWPWLPWACGLALAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLLDPL
ASLRPGFWLSFTAVAVLIFTFGGRLGGWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLMLPVPHVGEGLLWLAGGLIDALFRALAVIAGQWPAWTAAAVPGWVWLLGSLGAVLLLLPRGVPMRALGWPLLLLLV
VPPRERLDEGVADIWQLDVGQGLAILIRTRHYALLYDAGPRFGDFDLGERVVLPALRKLNVEKLDLMLLSHADADHAGGA
LAITRGLTVDQVISGDPAGLPAQLGAEACASGQQWQWDGVRFQLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSHAE
RVLLDGSLAVPTQWLQAPHHGSRSSSSMALLKVLKPESVLISRGHGNSFGHPHPTVLARYRKLGLHIYDSAEQGAIHLQL
GRFKPPWTMRQQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=579024 HU718_RS22465 WP_186613749.1 5079425..5081659(-) (comA) [Pseudomonas tensinigenes strain ZA 5.3]
ATGCGCACAGGGATGATGGCGCTCGCAGTCGGTCTGCTGGCCCCGGTTTTTATGTCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTATTGCCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGTGTCGGTGCGCAGTGGGCGTTGAATGATCGCTTGCCGGCCGGGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
CGGGTGATCGGCTTGCCGCAGAATAGCGACGGCGTGGTGCGTTTCGAATTGGCTGATGCGCTCTCCCGTCACGAAAAACT
GCCACCGCTGATGCGCCTGGCCTGGTACGGCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGTGCGGGTGGTTTGCTCAATCCAGACGCTTTCGATTACGAGGCGTGGCTACTGGCGCAACGCATCGGTGCGACCGGC
ACGATCAAGGACGGCCAACGCCTGAGCGAGGCACGCTGGGCCTGGCGCGACAGTATTCGGCAGCGTTTGCTCGAGGTGGA
CGCACAGGGGCGGGCCGGGGCATTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGGCTCAGTCGCGAGGACTGGCAGATTC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGCCAGCACATCGGCTTGCTGGCGGCGTTGATGTACATGCTG
GTCGCCGGCTTGGCCCGCTTTGGCCTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGCGGCCTGGCATTAGCGGC
TGCGCTCGGTTATGGCCTCCTTGCCGGTTTCGACGTACCGGTACAGCGCGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGTGCGTGGTGGCCGTTGCTGCTGGCGTTCAATGCGGTGCTTTTGCTCGATCCCCTG
GCCAGCCTGCGCCCCGGCTTCTGGTTGTCCTTTACGGCCGTAGCAGTGTTGATTTTTACCTTTGGTGGCCGCTTGGGTGG
GTGGCGTTGGTGGCAAACCTGGACGCGGGCGCAATGGTTGATAGCCATCGGTCTGTGCCCGGTGTTGCTGGCACTGAATC
TGCCGATCAGCCTGAGCGGGCCATTGGCAAATCTGTTGGCGGTGCCTTGGGTCAGCCTCGTGGTGTTGCCGCCGGCACTG
CTCGGCACGCTGATGTTACCGGTGCCGCATGTCGGGGAAGGTCTTTTGTGGCTGGCCGGCGGTTTGATCGACGCGCTGTT
TCGCGCTTTGGCGGTGATTGCCGGGCAGTGGCCGGCATGGACAGCCGCCGCCGTGCCGGGCTGGGTCTGGTTGCTCGGCA
GCCTCGGTGCCGTGTTGTTGCTGTTGCCGCGCGGCGTGCCGATGCGTGCGCTGGGCTGGCCATTGCTGTTGCTATTGGTT
GTGCCGCCACGCGAGCGCCTGGATGAAGGGGTGGCCGATATCTGGCAACTCGATGTTGGTCAAGGCCTGGCCATCCTGAT
CCGCACCCGTCATTACGCGCTGCTGTATGACGCCGGGCCGCGTTTTGGCGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCGCATTGCGCAAACTCAATGTGGAAAAACTCGATTTGATGCTGCTCAGCCATGCGGACGCCGATCACGCTGGCGGCGCT
TTGGCGATCACTCGTGGTTTGACCGTCGATCAAGTGATCAGCGGTGACCCGGCGGGACTGCCTGCGCAGTTGGGTGCCGA
AGCCTGCGCTAGTGGGCAGCAATGGCAATGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCTCACGACAGCA
ATCAGCGTTCCTGCGTATTGCAGATCGAGGCCAATGGTGAGCGACTGCTGCTGACCGGCGACATCGACAGCCATGCCGAA
CGCGTGCTGCTCGACGGTTCACTGGCCGTGCCGACGCAATGGCTGCAAGCGCCTCATCATGGCAGCCGCAGTTCATCGTC
GATGGCGCTGCTCAAAGTCTTGAAGCCGGAGTCTGTGCTGATCTCGCGAGGCCATGGCAACTCCTTTGGCCATCCCCACC
CAACCGTGCTGGCGCGTTACCGCAAACTGGGCCTGCACATTTACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGCACTCGCCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.709	96.237	0.603
comA	Ralstonia pseudosolanacearum GMI1000	32.432	100	0.371