Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU718_RS22460 Genome accession   NZ_CP077089
Coordinates   5078688..5079323 (-) Length   211 a.a.
NCBI ID   WP_038364506.1    Uniprot ID   A0A5E6X0Z4
Organism   Pseudomonas tensinigenes strain ZA 5.3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5073688..5084323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU718_RS22425 (HU718_022425) - 5074022..5074492 (-) 471 WP_186613759.1 (2Fe-2S)-binding protein -
  HU718_RS22430 (HU718_022430) murB 5074805..5075824 (-) 1020 WP_186613756.1 UDP-N-acetylmuramate dehydrogenase -
  HU718_RS22435 (HU718_022435) - 5075821..5076285 (-) 465 WP_186613754.1 low molecular weight protein-tyrosine-phosphatase -
  HU718_RS22440 (HU718_022440) kdsB 5076285..5077049 (-) 765 WP_186613752.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU718_RS22445 (HU718_022445) - 5077046..5077231 (-) 186 WP_003174668.1 Trm112 family protein -
  HU718_RS22450 (HU718_022450) lpxK 5077253..5078263 (-) 1011 WP_186613750.1 tetraacyldisaccharide 4'-kinase -
  HU718_RS22455 (HU718_022455) - 5078263..5078691 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  HU718_RS22460 (HU718_022460) exbB 5078688..5079323 (-) 636 WP_038364506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU718_RS22465 (HU718_022465) comA 5079425..5081659 (-) 2235 WP_186613749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU718_RS22470 (HU718_022470) - 5081796..5082314 (+) 519 WP_007908202.1 DUF2062 domain-containing protein -
  HU718_RS22475 (HU718_022475) - 5082462..5083241 (-) 780 WP_007908200.1 ABC transporter permease -
  HU718_RS22480 (HU718_022480) - 5083238..5084170 (-) 933 WP_150731190.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22971.10 Da        Isoelectric Point: 6.8771

>NTDB_id=579023 HU718_RS22460 WP_038364506.1 5078688..5079323(-) (exbB) [Pseudomonas tensinigenes strain ZA 5.3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=579023 HU718_RS22460 WP_038364506.1 5078688..5079323(-) (exbB) [Pseudomonas tensinigenes strain ZA 5.3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGTTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGCGTTATTCACGAGCTCGAGCGCTACGT
TAACGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAATGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCT
GCAGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGGTTCCTGCAACGCCGCATTGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E6X0Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844