Detailed information NTG0578968

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU749_RS21450
• Genome accession: NZ_CP077086
• Coordinates: 4899012..4901258 (-)
• Length: 748 a.a.
• NCBI ID: WP_095963198.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae strain SWRI108
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4894012..4906258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU749_RS21415 (HU749_021415)	murB	4894396..4895415 (-)	1020	WP_079304879.1	UDP-N-acetylmuramate dehydrogenase	-
HU749_RS21420 (HU749_021420)	-	4895412..4895876 (-)	465	WP_186651262.1	low molecular weight protein-tyrosine-phosphatase	-
HU749_RS21425 (HU749_021425)	kdsB	4895876..4896640 (-)	765	WP_186651260.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU749_RS21430 (HU749_021430)	-	4896637..4896822 (-)	186	WP_003179363.1	Trm112 family protein	-
HU749_RS21435 (HU749_021435)	lpxK	4896846..4897856 (-)	1011	WP_186651258.1	tetraacyldisaccharide 4'-kinase	-
HU749_RS21440 (HU749_021440)	-	4897856..4898284 (-)	429	WP_013694002.1	ExbD/TolR family protein	-
HU749_RS21445 (HU749_021445)	exbB	4898281..4898916 (-)	636	WP_014339519.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU749_RS21450 (HU749_021450)	comA	4899012..4901258 (-)	2247	WP_095963198.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU749_RS21455 (HU749_021455)	-	4901403..4901918 (+)	516	WP_041476071.1	DUF2062 domain-containing protein	-
HU749_RS21460 (HU749_021460)	-	4902085..4902864 (-)	780	WP_041476072.1	ABC transporter permease	-
HU749_RS21465 (HU749_021465)	-	4902867..4903799 (-)	933	WP_024616890.1	ABC transporter ATP-binding protein	-
HU749_RS21470 (HU749_021470)	-	4903936..4904559 (-)	624	WP_079305362.1	glutathione S-transferase family protein	-
HU749_RS21475 (HU749_021475)	-	4904604..4905263 (-)	660	WP_079304871.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81200.41 Da
• Isoelectric Point: 9.9438

>NTDB_id=578968 HU749_RS21450 WP_095963198.1 4899012..4901258(-) (comA) [Pseudomonas ogarae strain SWRI108]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVLALMALPFRSYPLGFFLFGLAWACLSAQFALDERLPVALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTLRLAWFGGPPINSGERWRLAVKLKRPAGLLNPHGFDYAAWLLSRGIGATG
TIKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLLGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPVAVPPWVLAIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPQRHAEIWQLDVGQGLAVLVRTRHHSLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
RAVRNGLPTMEVISGDPDALPAELLAGPCESGRRWEWDGVRFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTPAE
RALLDESLAAPIQWLAAPHHGSRSSSSMALLSRLQPHSVLISRGQGNAFGHPHPQVMARYRRSGLAVYDSAEQGAIRLQL
GAFEGPRTEAGRRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=578968 HU749_RS21450 WP_095963198.1 4899012..4901258(-) (comA) [Pseudomonas ogarae strain SWRI108]
ATGCGCACAGGATTAGTCGCGCTTGCACTGGGGCTGTTGGCACCGATTTTTTTGCCGGCACTGCCGCCGCTGTGGCTGAT
TGCAGCCATGCCGGTGCTGGCGCTGATGGCGTTGCCGTTTCGAAGCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCGT
GGGCCTGCCTGTCGGCGCAGTTTGCGCTGGACGAGCGGTTGCCCGTCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGATGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATTCACGTCGTACCCGATT
ACCGACAACGCTGCGCCTCGCCTGGTTCGGTGGCCCACCCATCAACAGCGGCGAACGCTGGCGATTGGCGGTGAAGCTCA
AGCGGCCCGCCGGGCTGCTGAACCCACACGGCTTCGACTATGCCGCCTGGTTGTTGAGCCGAGGTATCGGCGCGACCGGT
ACGATCAAGGACGGTCGTCTCCTGCAAGCGGCCCGGGGCGCCTGGCGCGACGAGGTGCGCCAGGCGCTGGCACAAGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCGCTGGTCCTGGGCGACGGCGGCGGCCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGCCTGTGGCCGGTCGGTCTGGCCTGGTTGCCTTGGGCCTGTGCACTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCCTGGTTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCCTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGGCC
GTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGGTCGGCCTGTGTCCGTTGCTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGACCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTGTTGCCGCCAGCGTTG
CTCGGCACGGCGTTGTTGCCGGTGCCGCTCTTGGGCGAAGGCCTGTTGTGGATCGCTGGCGGGCTGCTTGATCTGCTGTT
CAAGGGGCTGACGCTGGTTGCCGGACGAATGCCGGCCTGGGTCCCTGTTGCGGTCCCGCCCTGGGTCTTGGCTATCGCGG
CCTTCGGTGCTTTTTTGCTGCTGCTACCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTG
TTTCCACCGCGAGAGCACCTGCCCCAACGGCACGCCGAGATCTGGCAACTGGACGTGGGACAAGGGCTGGCGGTGCTGGT
ACGGACCCGGCATCACAGCCTGCTATACGACGCCGGGCCGCGCTTTGGCGAAGCTGATGTGGGCGAGCGGGTCGTATTGC
CGACCTTGCGCAAACTGGGTGTGCGCGGTTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTACGCAATGGGCTGCCGACGATGGAAGTCATCAGCGGCGATCCTGACGCGCTGCCCGCCGAGCTGCTGGCCGG
GCCTTGTGAAAGCGGTAGGCGTTGGGAGTGGGACGGGGTCAGGTTCGAGCTTTGGCGGTGGGCCTCTGCCGTTGAAAGCA
ACCAGAAGTCCTGCGTCCTGCTGGTGGAGGCCGGCGGCGAACGCCTGCTGCTGACTGGCGATATCGACACCCCTGCCGAA
CGGGCCTTGCTCGACGAGTCCCTGGCGGCGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGTAGCCGCAGTTCGTCGTC
GATGGCGTTGCTGTCACGTCTCCAGCCGCATTCGGTATTGATCTCCCGAGGGCAGGGCAACGCGTTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGACGCTCGGGCCTGGCGGTCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCTTTCGAGGGGCCGCGCACCGAGGCCGGGCGCCGCCGCTACTGGCGCGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.453	95.722	0.588
comA	Ralstonia pseudosolanacearum GMI1000	31.802	100	0.361