Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU749_RS21445 Genome accession   NZ_CP077086
Coordinates   4898281..4898916 (-) Length   211 a.a.
NCBI ID   WP_014339519.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4893281..4903916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS21410 (HU749_021410) - 4893660..4894130 (-) 471 WP_079304881.1 (2Fe-2S)-binding protein -
  HU749_RS21415 (HU749_021415) murB 4894396..4895415 (-) 1020 WP_079304879.1 UDP-N-acetylmuramate dehydrogenase -
  HU749_RS21420 (HU749_021420) - 4895412..4895876 (-) 465 WP_186651262.1 low molecular weight protein-tyrosine-phosphatase -
  HU749_RS21425 (HU749_021425) kdsB 4895876..4896640 (-) 765 WP_186651260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU749_RS21430 (HU749_021430) - 4896637..4896822 (-) 186 WP_003179363.1 Trm112 family protein -
  HU749_RS21435 (HU749_021435) lpxK 4896846..4897856 (-) 1011 WP_186651258.1 tetraacyldisaccharide 4'-kinase -
  HU749_RS21440 (HU749_021440) - 4897856..4898284 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  HU749_RS21445 (HU749_021445) exbB 4898281..4898916 (-) 636 WP_014339519.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU749_RS21450 (HU749_021450) comA 4899012..4901258 (-) 2247 WP_095963198.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU749_RS21455 (HU749_021455) - 4901403..4901918 (+) 516 WP_041476071.1 DUF2062 domain-containing protein -
  HU749_RS21460 (HU749_021460) - 4902085..4902864 (-) 780 WP_041476072.1 ABC transporter permease -
  HU749_RS21465 (HU749_021465) - 4902867..4903799 (-) 933 WP_024616890.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22813.95 Da        Isoelectric Point: 8.0841

>NTDB_id=578967 HU749_RS21445 WP_014339519.1 4898281..4898916(-) (exbB) [Pseudomonas ogarae strain SWRI108]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578967 HU749_RS21445 WP_014339519.1 4898281..4898916(-) (exbB) [Pseudomonas ogarae strain SWRI108]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGACAGGTCTGGGTCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGTGCCAGTTCACCGCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTCGGGACCATCGCCGCCATGTCCCCACTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGCATTTCCAAAGCCTTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAATTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGAAGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839