Detailed information NTG0578946

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HU773_RS23865
• Genome accession: NZ_CP077085
• Coordinates: 5347387..5348253 (+)
• Length: 288 a.a.
• NCBI ID: WP_057958433.1
• Uniprot ID: -
• Organism: Pseudomonas shahriarae strain SWRI52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5342387..5353253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU773_RS23835 (HU773_023835)	nadC	5342584..5343432 (+)	849	WP_186625302.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HU773_RS23840 (HU773_023840)	-	5343499..5343804 (-)	306	WP_057444407.1	DUF6388 family protein	-
HU773_RS23850 (HU773_023850)	-	5344054..5345460 (-)	1407	WP_186625303.1	O-antigen ligase family protein	-
HU773_RS23855 (HU773_023855)	-	5345539..5345949 (-)	411	WP_186625305.1	pilin	-
HU773_RS23860 (HU773_023860)	pilC	5346152..5347378 (+)	1227	WP_186625304.1	type II secretion system F family protein	Machinery gene
HU773_RS23865 (HU773_023865)	pilD	5347387..5348253 (+)	867	WP_057958433.1	prepilin peptidase	Machinery gene
HU773_RS23870 (HU773_023870)	coaE	5348250..5348873 (+)	624	WP_057958402.1	dephospho-CoA kinase	-
HU773_RS23875 (HU773_023875)	yacG	5348870..5349073 (+)	204	WP_032861907.1	DNA gyrase inhibitor YacG	-
HU773_RS23880 (HU773_023880)	-	5349070..5349285 (-)	216	WP_057441062.1	hypothetical protein	-
HU773_RS23885 (HU773_023885)	-	5349349..5350038 (-)	690	WP_057441064.1	energy-coupling factor ABC transporter permease	-
HU773_RS23890 (HU773_023890)	-	5350035..5350502 (-)	468	WP_057441067.1	hypothetical protein	-
HU773_RS23895 (HU773_023895)	-	5350605..5351234 (+)	630	WP_057441069.1	DUF1780 domain-containing protein	-
HU773_RS23900 (HU773_023900)	-	5351274..5351447 (+)	174	WP_057441071.1	DUF3094 family protein	-
HU773_RS23905 (HU773_023905)	-	5351508..5352806 (+)	1299	WP_057441073.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31853.85 Da
• Isoelectric Point: 7.3428

>NTDB_id=578946 HU773_RS23865 WP_057958433.1 5347387..5348253(+) (pilD) [Pseudomonas shahriarae strain SWRI52]
MDLLLTLHPWLFVWASLVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSQPIRPW
QNIPVLSYLLLRGRCAQCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLILNYFELYTTLPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVGAI
AGVIVLRIRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=578946 HU773_RS23865 WP_057958433.1 5347387..5348253(+) (pilD) [Pseudomonas shahriarae strain SWRI52]
CTGGACCTCCTCCTGACCCTCCATCCCTGGCTGTTCGTCTGGGCTTCACTGGTGCTGGGGCTGATCGTCGGCAGCTTCCT
CAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCGCCCAGGCCCATGAAATACTCGGCCTGCCCC
CGGAACCCGGCGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGCTGCCCGCACTGCTCACAGCCGATTCGCCCGTGG
CAAAACATCCCGGTGCTCAGCTACTTGCTGCTGCGGGGGCGCTGCGCGCAGTGCCACGGTTCCATCAGCCCACGCTACCC
GCTGACCGAACTGGCGTGCGGGCTGCTTTCGGCATTTATTGCCTGGCATTACGGCTTCGGCTGGCCAGCCGCTGGCGTGC
TGTTCTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGATGTGCTGGTGCTGCCA
CTGCTGTGGCTGGGGTTGATCCTCAATTATTTCGAGTTGTACACGACCCTGCCCGATGCCCTGCTGGGCGCGGTTGCCGG
TTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGC
TGCTGGCCCTGCTCGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCATCGCTGGTGGGGGCGATC
GCAGGGGTGATTGTCTTGCGCATACGCAACGCGCAGACGTCAGTGCCCTTGCCTTTTGGTCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.958	0.535
pilD	Vibrio campbellii strain DS40M4	51.429	97.222	0.5
pilD	Acinetobacter baumannii D1279779	50.181	96.181	0.483
pilD	Acinetobacter nosocomialis M2	49.458	96.181	0.476
pilD	Neisseria gonorrhoeae MS11	52.174	87.847	0.458