Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HU773_RS20555 Genome accession   NZ_CP077085
Coordinates   4627401..4629656 (-) Length   751 a.a.
NCBI ID   WP_186626291.1    Uniprot ID   -
Organism   Pseudomonas shahriarae strain SWRI52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4622401..4634656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU773_RS20520 (HU773_020520) murB 4622804..4623823 (-) 1020 WP_120733914.1 UDP-N-acetylmuramate dehydrogenase -
  HU773_RS20525 (HU773_020525) - 4623820..4624284 (-) 465 WP_057439613.1 low molecular weight protein-tyrosine-phosphatase -
  HU773_RS20530 (HU773_020530) kdsB 4624284..4625048 (-) 765 WP_120733916.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU773_RS20535 (HU773_020535) - 4625045..4625230 (-) 186 WP_003174668.1 Trm112 family protein -
  HU773_RS20540 (HU773_020540) lpxK 4625255..4626265 (-) 1011 WP_120733918.1 tetraacyldisaccharide 4'-kinase -
  HU773_RS20545 (HU773_020545) - 4626265..4626693 (-) 429 WP_029299722.1 ExbD/TolR family protein -
  HU773_RS20550 (HU773_020550) exbB 4626690..4627325 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU773_RS20555 (HU773_020555) comA 4627401..4629656 (-) 2256 WP_186626291.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU773_RS20560 (HU773_020560) - 4629793..4630308 (+) 516 WP_186626292.1 DUF2062 domain-containing protein -
  HU773_RS20565 (HU773_020565) - 4630528..4633281 (+) 2754 WP_186626293.1 response regulator -
  HU773_RS20570 (HU773_020570) - 4633393..4634382 (+) 990 WP_120733922.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 82029.42 Da        Isoelectric Point: 10.8181

>NTDB_id=578941 HU773_RS20555 WP_186626291.1 4627401..4629656(-) (comA) [Pseudomonas shahriarae strain SWRI52]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLAWVCFSAQRALDDRLVPALDGQTRWLEG
RVSGLPQQSGGVVRFELSDSRSRQDRLPQRIRVSWQGGPPVRSGERWRLAVTLKRPSGLLNFQGFDQEAWLLAQRVGATG
SVKDGQRLAPARHAWRDGVRQQLLAVDARGREAGLAALVLGDGSGLAAEDWRILQDTGTVHLLVISGQHIGLLSGLIYAW
VAGLARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFAVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLLLEPL
ASLQPGFWLSFAAVAVLLLAFSGRLGPWRAWWAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLTVPWLGSGLLWLAGGALDWLFKALAWLAGHVPAWMPAEVPVGYWLLSLLGAVLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRVGDYDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVARGLPVLRVVGGETQGLPAFLGTQACVSGEQWEWDGVVFQLWQWADARNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQVPHHGSRSSSSWPFVQQLAPKAVLISRGRGNGFGHPHPQVVARYQYLRSTLYDSAEQGAVRLRL
GAFEAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=578941 HU773_RS20555 WP_186626291.1 4627401..4629656(-) (comA) [Pseudomonas shahriarae strain SWRI52]
ATGCGTACAGGGATGTTTGCGCTGGCGTTAGGGCTGCTGGCGTTGCGCCTGCTGCCCGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTACTGCCGTTTCGTACTTATCCGCTGGCGTTTTTCCTGTTGGGCCTGGCGT
GGGTCTGTTTCAGCGCGCAACGGGCGCTCGACGACCGGCTCGTACCCGCGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGCCGCAGCAGAGTGGTGGGGTGGTGCGCTTCGAACTGAGCGACAGCCGGTCACGCCAGGACCGGCT
ACCCCAGCGCATCCGTGTGAGCTGGCAGGGCGGCCCGCCCGTGCGCAGTGGTGAGCGCTGGCGTTTGGCCGTGACCCTCA
AGCGACCCTCCGGCCTGTTGAATTTCCAGGGCTTCGATCAAGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGACGGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGACATGCCTGGCGCGATGGGGTCCGCCAGCAGCTATTGGCGGTAGA
CGCCCGGGGGCGTGAAGCCGGGCTGGCCGCACTGGTGCTGGGCGATGGCTCCGGCTTGGCCGCCGAGGATTGGCGCATTT
TGCAGGACACCGGCACCGTGCATCTATTGGTCATTTCCGGCCAGCATATCGGCCTGTTGTCGGGGTTGATCTATGCCTGG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGTTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGC
AGCGCTGGCCTATGGCTTGCTCGCCGGTTTTGCCGTGCCAGTGCAGCGGGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGCCTGCGGTTTCGCCACCTGGGGATCTGGTGGCCACTGCTGCTGGCCCTGAATGCGGTGCTGCTCCTCGAACCCCTG
GCCAGCCTGCAACCGGGTTTCTGGCTGTCATTTGCCGCCGTGGCCGTGTTGCTGCTGGCCTTTAGCGGCCGCCTGGGGCC
CTGGCGGGCGTGGTGGGCCTGGACCCGTGCCCAATGGCTGATCGCGATAGGGCTGTTTCCGCTGCTACTGATCCTCGGTT
TGCCGATCAGCTTGAGTGCGCCGCTGGCCAATCTGTTTGCGGTGCCGTGGATCAGCCTGTTGGTGTTGCCGCTGGCGCTG
GCGGGCACGCTGTTGCTGACGGTGCCATGGCTGGGCAGTGGCCTGTTGTGGCTGGCGGGGGGCGCGCTGGATTGGCTGTT
CAAGGCCCTGGCCTGGCTGGCCGGGCACGTGCCCGCCTGGATGCCGGCCGAGGTGCCTGTGGGCTACTGGTTGCTCAGTC
TGCTGGGCGCGGTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGTGAGTCGATCCCGTTGGGCCAGGTGGCGGTGGAGCAACTGGATGTCGGCCAGGGATTGTCGATCGTGTT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGGCCACGGGTGGGGGATTACGATCTTGGCGAGCGCGTGGTATTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAGGTGGACTTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGCGCG
GCGGCGGTGGCCCGTGGGTTACCCGTCCTGCGCGTGGTGGGCGGGGAAACCCAGGGGTTGCCGGCGTTCCTCGGCACTCA
GGCCTGCGTCAGCGGTGAGCAGTGGGAGTGGGACGGCGTGGTGTTCCAGCTGTGGCAATGGGCAGATGCCCGCAACGGCA
ACGCGAAGTCGTGCGTGCTGCAGGTCCAGGCCAATGGCGAGCGGTTGCTGCTGACCGGCGATATCGACCGCGAGGCCGAG
CGGGCCTTGCTGGCCACGCCTCTGGCGGTCGCCACGGATTGGCTGCAAGTGCCCCATCATGGCAGCCGCAGTTCCTCGTC
CTGGCCGTTTGTCCAGCAACTGGCCCCCAAGGCGGTGCTGATCTCCCGTGGGCGAGGCAATGGTTTCGGTCATCCGCACC
CGCAAGTGGTGGCGCGTTACCAGTATTTGCGCAGCACCCTTTATGACAGCGCCGAACAGGGCGCGGTGCGTCTGCGCCTG
GGGGCTTTCGAGGCGCCGGTCATGGCACGCAGCCAGCGCCGTTTCTGGCGCGCGCCTGTCATCGACAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.446

95.606

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.604

100

0.369