Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU773_RS20550 Genome accession   NZ_CP077085
Coordinates   4626690..4627325 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas shahriarae strain SWRI52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4621690..4632325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU773_RS20515 (HU773_020515) - 4622089..4622559 (-) 471 WP_057960403.1 (2Fe-2S)-binding protein -
  HU773_RS20520 (HU773_020520) murB 4622804..4623823 (-) 1020 WP_120733914.1 UDP-N-acetylmuramate dehydrogenase -
  HU773_RS20525 (HU773_020525) - 4623820..4624284 (-) 465 WP_057439613.1 low molecular weight protein-tyrosine-phosphatase -
  HU773_RS20530 (HU773_020530) kdsB 4624284..4625048 (-) 765 WP_120733916.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU773_RS20535 (HU773_020535) - 4625045..4625230 (-) 186 WP_003174668.1 Trm112 family protein -
  HU773_RS20540 (HU773_020540) lpxK 4625255..4626265 (-) 1011 WP_120733918.1 tetraacyldisaccharide 4'-kinase -
  HU773_RS20545 (HU773_020545) - 4626265..4626693 (-) 429 WP_029299722.1 ExbD/TolR family protein -
  HU773_RS20550 (HU773_020550) exbB 4626690..4627325 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU773_RS20555 (HU773_020555) comA 4627401..4629656 (-) 2256 WP_186626291.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU773_RS20560 (HU773_020560) - 4629793..4630308 (+) 516 WP_186626292.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=578940 HU773_RS20550 WP_029299724.1 4626690..4627325(-) (exbB) [Pseudomonas shahriarae strain SWRI52]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578940 HU773_RS20550 WP_029299724.1 4626690..4627325(-) (exbB) [Pseudomonas shahriarae strain SWRI52]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATTGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTAACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGGGCCAATTCCCCTCTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCCCGGGTAATCCACGAACTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCGGCAATGGCGCCATTGCTGGGCTTGCTCGGTACCGTGCTGGGCATGATTGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGTATTTCCAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATCCCTGCGGTGTTTTTCCACCGATTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGATGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867