Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HU722_RS17725 Genome accession   NZ_CP077084
Coordinates   3939418..3941631 (-) Length   737 a.a.
NCBI ID   WP_065890782.1    Uniprot ID   A0A8H9YS77
Organism   Pseudomonas tritici strain SWRI145     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3934418..3946631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU722_RS17690 (HU722_0017690) murB 3934813..3935832 (-) 1020 WP_065890784.1 UDP-N-acetylmuramate dehydrogenase -
  HU722_RS17695 (HU722_0017695) - 3935829..3936293 (-) 465 WP_065872101.1 low molecular weight protein-tyrosine-phosphatase -
  HU722_RS17700 (HU722_0017700) kdsB 3936293..3937057 (-) 765 WP_065881922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU722_RS17705 (HU722_0017705) - 3937054..3937239 (-) 186 WP_003174668.1 Trm112 family protein -
  HU722_RS17710 (HU722_0017710) lpxK 3937264..3938274 (-) 1011 WP_065890783.1 tetraacyldisaccharide 4'-kinase -
  HU722_RS17715 (HU722_0017715) - 3938274..3938702 (-) 429 WP_065872098.1 biopolymer transporter ExbD -
  HU722_RS17720 (HU722_0017720) exbB 3938699..3939334 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU722_RS17725 (HU722_0017725) comA 3939418..3941631 (-) 2214 WP_065890782.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU722_RS17730 (HU722_0017730) - 3941779..3942294 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  HU722_RS17735 (HU722_0017735) - 3942339..3942878 (-) 540 Protein_3526 ATP-binding protein -
  HU722_RS17740 (HU722_0017740) - 3942861..3943011 (-) 151 Protein_3527 DNA-binding response regulator -
  HU722_RS17745 (HU722_0017745) - 3943217..3945970 (+) 2754 WP_065881915.1 response regulator -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80028.08 Da        Isoelectric Point: 10.6948

>NTDB_id=578915 HU722_RS17725 WP_065890782.1 3939418..3941631(-) (comA) [Pseudomonas tritici strain SWRI145]
MFALALGLLALRFLPALPPAGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLKPTLDGQTRWVEGRVIG
LPQQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVHSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATGTVKD
GERLAAARSAWRDGVRQRLMAVDAFGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGMLAGLIYGLIAGL
ARYGLWPRTWPWLPWACGLAFTAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALDGVLVLEPLASLQ
SGFWLSFAAVAVLILAFGGRLGAWSVWQAWTRPQWLIAVGLLPVLLVLGLPISLSAPLANLVAVPWISLVVLPLALLGTA
LLPLPFIGEGVLWLAGGALDGLFKGLAWLAGQLPAWIPAEVPQRYWLLSLIGALLLLLPKGVPFRVLGLPMLLLAVFPPR
ELVPHGQVEVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLQKLGVKALDMMLISHADADHAGGAGAIA
KGMPIKRVVGGETEGLPAFLGTQSCNSGERWTWDGVTFELWQWPDAISGNPKSCVLQVQANGERLLLTGDIDRAAEQAML
ASPLAVPTDWLQAPHHGSRSSSSWAFVEHLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLQLGAFA
PPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=578915 HU722_RS17725 WP_065890782.1 3939418..3941631(-) (comA) [Pseudomonas tritici strain SWRI145]
ATGTTCGCGTTGGCGCTGGGGTTACTGGCCCTGCGTTTTTTACCGGCATTGCCGCCTGCGGGATGGCTGATCGCCTTGCT
GGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACTTACCCACTGGCGTTTTTCCTGCTGGGGCTGAGCTGGGCATGCATCA
GTGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCGACCCTGGACGGCCAGACACGTTGGGTGGAGGGGCGAGTCATTGGG
CTGCCGCAGCAGACGGGCGAAGGGGTGCGTTTCGAATTGGCCGACAGCCGGTCGCGAAATGCCCGGTTGCCCAAACGCAT
CCGAGTGTCCTGGCGTGGCGGGCCGCCTGTGCACAGCGGTGAGCGCTGGCGCCTGGCAATCACCCTGAAGCGGCCGGCCG
GTCTGCTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTCGCCCAACGTATTGGTGCCACCGGCACGGTGAAGGAC
GGCGAACGTCTGGCTGCGGCGCGCAGCGCCTGGCGGGATGGCGTGCGCCAGCGCTTGATGGCGGTGGATGCCTTTGGTCG
GGAAGCAGGCTTGATCGCCCTGGTGCTGGGAGACGGCTCTGGATTGGCCGCCGCTGATTGGCAGGTGCTACAGGACACCG
GCACTGTGCATCTGCTGGTTATATCCGGCCAGCACATCGGCATGCTGGCGGGCTTGATCTACGGGTTGATCGCCGGGTTG
GCACGTTATGGGCTTTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTCACGGCCGCGCTGAGTTA
CGGCTTGCTGGCCGGGTTTGGCGTGCCGGTGCAGCGCGCCTGTGTGATGGTGGGGCTGGTGTTGTTATGGCGGCTGCGCT
TCCGGCACCTGGGGCTGTGGTGGCCGTTGCTGTTGGCACTCGATGGGGTGTTGGTCCTGGAGCCGTTGGCCAGTTTACAG
TCGGGGTTCTGGTTGTCGTTTGCGGCGGTGGCAGTGCTGATCCTGGCGTTTGGTGGGCGGCTGGGGGCGTGGAGCGTGTG
GCAGGCGTGGACCCGCCCCCAGTGGTTGATTGCCGTTGGATTGTTACCTGTCTTGCTGGTGCTGGGGTTGCCCATCAGCC
TGAGTGCGCCGCTGGCCAATCTGGTTGCCGTGCCCTGGATCAGCCTGGTGGTGTTACCGCTGGCGTTGCTGGGGACAGCG
TTGCTGCCGCTGCCGTTTATAGGGGAGGGAGTGCTATGGCTCGCGGGCGGTGCGTTGGATGGGTTGTTCAAGGGCTTGGC
ATGGCTTGCCGGACAACTGCCTGCCTGGATTCCGGCCGAGGTACCGCAGCGGTATTGGCTGCTGAGCCTGATCGGTGCGC
TGCTATTGCTATTACCCAAGGGCGTGCCATTTCGTGTGCTGGGCTTGCCGATGCTGTTGCTGGCGGTGTTTCCCCCGCGT
GAACTGGTGCCCCATGGGCAAGTGGAGGTGGTGCAGTTGGACGTCGGCCAGGGGCAGTCGCTGATCTTGCGTACTCGCCA
TCACACCTTGCTCTACGACGCCGGCCCGCGCTCCGGAACCTTTGACCTGGGTGCGCGGGTGGTATTGCCGTCGTTGCAAA
AACTCGGGGTAAAGGCGTTAGACATGATGTTGATCAGCCATGCCGATGCGGATCATGCCGGCGGCGCGGGGGCGATTGCC
AAGGGGATGCCAATCAAACGCGTGGTGGGCGGGGAAACCGAGGGCCTGCCGGCGTTTCTCGGTACGCAGTCGTGCAACAG
TGGCGAGCGATGGACCTGGGACGGTGTGACGTTCGAGCTGTGGCAGTGGCCGGACGCTATCAGTGGCAACCCGAAGTCCT
GCGTGTTGCAGGTGCAGGCCAATGGTGAGCGCTTACTGTTGACCGGCGATATCGACCGCGCGGCGGAACAGGCAATGCTC
GCCTCACCTCTGGCAGTGCCCACCGATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCGTCCTGGGCGTTTGT
GGAACACCTTGCCCCTCGTTCGGTGCTCATTTCACGAGGGCGCAGCAATGCGTTCGGCCATCCGCATCCGCAGGTGATGG
CACGCTACCAGCGGTTGGGCAGCCAGGTCTATGACAGCGCCGAGCAGGGCGCCGTGCGCCTGCAACTGGGGGCATTTGCA
CCACCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGTGAACGGTTACCTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Competence protein (Competence)

(194-458)

Domain of unknown function (DUF4131) (DUF4131)

(15-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.693

0.596
  comA Ralstonia pseudosolanacearum GMI1000

35.516

100

0.383