Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU722_RS17720 Genome accession   NZ_CP077084
Coordinates   3938699..3939334 (-) Length   211 a.a.
NCBI ID   WP_033896796.1    Uniprot ID   -
Organism   Pseudomonas tritici strain SWRI145     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3933699..3944334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU722_RS17685 (HU722_0017685) - 3934066..3934737 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  HU722_RS17690 (HU722_0017690) murB 3934813..3935832 (-) 1020 WP_065890784.1 UDP-N-acetylmuramate dehydrogenase -
  HU722_RS17695 (HU722_0017695) - 3935829..3936293 (-) 465 WP_065872101.1 low molecular weight protein-tyrosine-phosphatase -
  HU722_RS17700 (HU722_0017700) kdsB 3936293..3937057 (-) 765 WP_065881922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU722_RS17705 (HU722_0017705) - 3937054..3937239 (-) 186 WP_003174668.1 Trm112 family protein -
  HU722_RS17710 (HU722_0017710) lpxK 3937264..3938274 (-) 1011 WP_065890783.1 tetraacyldisaccharide 4'-kinase -
  HU722_RS17715 (HU722_0017715) - 3938274..3938702 (-) 429 WP_065872098.1 biopolymer transporter ExbD -
  HU722_RS17720 (HU722_0017720) exbB 3938699..3939334 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU722_RS17725 (HU722_0017725) comA 3939418..3941631 (-) 2214 WP_065890782.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU722_RS17730 (HU722_0017730) - 3941779..3942294 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  HU722_RS17735 (HU722_0017735) - 3942339..3942878 (-) 540 Protein_3526 ATP-binding protein -
  HU722_RS17740 (HU722_0017740) - 3942861..3943011 (-) 151 Protein_3527 DNA-binding response regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.05 Da        Isoelectric Point: 7.3615

>NTDB_id=578914 HU722_RS17720 WP_033896796.1 3938699..3939334(-) (exbB) [Pseudomonas tritici strain SWRI145]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWAWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578914 HU722_RS17720 WP_033896796.1 3938699..3939334(-) (exbB) [Pseudomonas tritici strain SWRI145]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTATTGGGGCAGGTCTGGGCCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCTGCCGCCCGTGTCATTCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGTTGCTCGGTTTGCTGGGGACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTATTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCTTCGGTATTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTCGTGCAGGGTGACCGTGACGTTGATCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848