Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HU731_RS04190 Genome accession   NZ_CP077083
Coordinates   1016996..1019221 (-) Length   741 a.a.
NCBI ID   WP_186607997.1    Uniprot ID   -
Organism   Pseudomonas salmasensis strain SWRI126     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011996..1024221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU731_RS04155 (HU731_004155) murB 1012366..1013385 (-) 1020 WP_186608002.1 UDP-N-acetylmuramate dehydrogenase -
  HU731_RS04160 (HU731_004160) - 1013382..1013846 (-) 465 WP_186608001.1 low molecular weight protein-tyrosine-phosphatase -
  HU731_RS04165 (HU731_004165) kdsB 1013846..1014610 (-) 765 WP_186608000.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU731_RS04170 (HU731_004170) - 1014607..1014792 (-) 186 WP_003174668.1 Trm112 family protein -
  HU731_RS04175 (HU731_004175) lpxK 1014817..1015827 (-) 1011 WP_186607999.1 tetraacyldisaccharide 4'-kinase -
  HU731_RS04180 (HU731_004180) - 1015827..1016255 (-) 429 WP_186607998.1 biopolymer transporter ExbD -
  HU731_RS04185 (HU731_004185) exbB 1016252..1016887 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU731_RS04190 (HU731_004190) comA 1016996..1019221 (-) 2226 WP_186607997.1 ComEC/Rec2 family competence protein Machinery gene
  HU731_RS04195 (HU731_004195) - 1019357..1019872 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  HU731_RS04200 (HU731_004200) - 1019876..1021234 (-) 1359 WP_056783717.1 sensor histidine kinase -
  HU731_RS04205 (HU731_004205) - 1021221..1021949 (-) 729 WP_186607996.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80471.61 Da        Isoelectric Point: 10.5453

>NTDB_id=578880 HU731_RS04190 WP_186607997.1 1016996..1019221(-) (comA) [Pseudomonas salmasensis strain SWRI126]
MKTGMLALALGLLTLRWLPALPPGTVLLAMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTGTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEGVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLGYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVEQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCTSGERWEWDGVWFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=578880 HU731_RS04190 WP_186607997.1 1016996..1019221(-) (comA) [Pseudomonas salmasensis strain SWRI126]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGACGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCACCGTGCT
ATTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTCTTCCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGACGGGCAGACTCGTTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCCCAGCAGACGGGTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAGCGTATCCGCGTGTCCTGGCACGGCGGGCCAGTGGTGAACAGCGGCGAGCGCTGGCGCCTGGCGCTGACACTCA
AGCGGCCTGCGGGCCTGCTCAATTTCCATGGGGTTGACCATGAAGCCTGGCTGCTCGCCCAGCGTATCGGTGCCACTGCA
ACGGTGAAAGACGGTGAACGTCTCGCACCGGCCCGCAATGCATGGCGCGATGCTGTTCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGCTGGTATTGGGCGACGGTTCCGGCCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGTTGGCGGGCTTGATCTACGGCTTG
GTCGCTGTTTTGGCGCGCTATGGTTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCTTTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCTTGTGTAATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGGTTCCGCCATTTGGGGCTATGGTGGCCGTTGCTGCTGGCGCTGAATGGCGTGCTGGTGCTGGAGCCCTTG
GCCAGCCTGCAGGTGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGCTGCTGGCATTTGGAGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCCCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGCTGGGTC
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCTTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTACCGCTGGCGGGAGAAGGTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGGGTATTGGCTGGTCAGCC
TGATGGGCGCGGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGCTGTTGATGGCCGTT
TTTCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTAGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGAGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTACCAGCGGCGAGCGCTGGGAATGGGACGGCGTGTGGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGATCGCGCCGCCGAA
CAGGCGTTTCTGGCTTCCCCGCTGGCGGTTCCGACCGACTGGCTACAGGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGCCTTTCGTACAAAGGTTGGCGCCCACCTCGGTGCTGATTTCCCGCGGGCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTGGAGCGCTACCAAGCGCTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCCGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCGGCGACGGTTGCGCGCAGCCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.804

96.356

0.576
  comA Ralstonia pseudosolanacearum GMI1000

34.717

100

0.372