Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU731_RS04185 Genome accession   NZ_CP077083
Coordinates   1016252..1016887 (-) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas salmasensis strain SWRI126     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011252..1021887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU731_RS04150 (HU731_004150) - 1011623..1012294 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  HU731_RS04155 (HU731_004155) murB 1012366..1013385 (-) 1020 WP_186608002.1 UDP-N-acetylmuramate dehydrogenase -
  HU731_RS04160 (HU731_004160) - 1013382..1013846 (-) 465 WP_186608001.1 low molecular weight protein-tyrosine-phosphatase -
  HU731_RS04165 (HU731_004165) kdsB 1013846..1014610 (-) 765 WP_186608000.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU731_RS04170 (HU731_004170) - 1014607..1014792 (-) 186 WP_003174668.1 Trm112 family protein -
  HU731_RS04175 (HU731_004175) lpxK 1014817..1015827 (-) 1011 WP_186607999.1 tetraacyldisaccharide 4'-kinase -
  HU731_RS04180 (HU731_004180) - 1015827..1016255 (-) 429 WP_186607998.1 biopolymer transporter ExbD -
  HU731_RS04185 (HU731_004185) exbB 1016252..1016887 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU731_RS04190 (HU731_004190) comA 1016996..1019221 (-) 2226 WP_186607997.1 ComEC/Rec2 family competence protein Machinery gene
  HU731_RS04195 (HU731_004195) - 1019357..1019872 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  HU731_RS04200 (HU731_004200) - 1019876..1021234 (-) 1359 WP_056783717.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=578879 HU731_RS04185 WP_003192043.1 1016252..1016887(-) (exbB) [Pseudomonas salmasensis strain SWRI126]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578879 HU731_RS04185 WP_003192043.1 1016252..1016887(-) (exbB) [Pseudomonas salmasensis strain SWRI126]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAGGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCTTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTTATCCATGAGCTGGAGCGCTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACGGTACTAGGCATGATCGATATCTTCA
GTGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTACTGGCCGGGGGTATCTCCAAGGCCCTGATCACCACCGCA
GCGGGCTTGATGGTGGGGATCCCTTCGGTGTTCTTCCACCGTTTCCTACAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858