Detailed information NTG0578840

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KSS92_RS20430
• Genome accession: NZ_CP077081
• Coordinates: 4644755..4646989 (-)
• Length: 744 a.a.
• NCBI ID: WP_217878666.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain SWRI76
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4639755..4651989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS92_RS20395 (KSS92_20395)	murB	4640133..4641152 (-)	1020	WP_217878663.1	UDP-N-acetylmuramate dehydrogenase	-
KSS92_RS20400 (KSS92_20400)	-	4641149..4641613 (-)	465	WP_076563814.1	low molecular weight protein-tyrosine-phosphatase	-
KSS92_RS20405 (KSS92_20405)	kdsB	4641613..4642377 (-)	765	WP_217878664.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KSS92_RS20410 (KSS92_20410)	-	4642374..4642559 (-)	186	WP_003179363.1	Trm112 family protein	-
KSS92_RS20415 (KSS92_20415)	lpxK	4642583..4643593 (-)	1011	WP_217878665.1	tetraacyldisaccharide 4'-kinase	-
KSS92_RS20420 (KSS92_20420)	-	4643593..4644021 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
KSS92_RS20425 (KSS92_20425)	exbB	4644018..4644653 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KSS92_RS20430 (KSS92_20430)	comA	4644755..4646989 (-)	2235	WP_217878666.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KSS92_RS20435 (KSS92_20435)	-	4647126..4647644 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
KSS92_RS20440 (KSS92_20440)	-	4647782..4648561 (-)	780	WP_039760202.1	ABC transporter permease	-
KSS92_RS20445 (KSS92_20445)	-	4648558..4649490 (-)	933	WP_217878667.1	ABC transporter ATP-binding protein	-
KSS92_RS20450 (KSS92_20450)	-	4649624..4650247 (-)	624	WP_217878668.1	glutathione S-transferase family protein	-
KSS92_RS20455 (KSS92_20455)	-	4650291..4650950 (-)	660	WP_206421730.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81805.90 Da
• Isoelectric Point: 9.3360

>NTDB_id=578840 KSS92_RS20430 WP_217878666.1 4644755..4646989(-) (comA) [Pseudomonas atacamensis strain SWRI76]
MRTGMMALAVGLLAPVFLPALPPVGLLVVLPVVALMLLPFRSYPLAFLLFGFTWACFSAQWALTDRLPPGLDGETRWLEG
RVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLDMQALDLMLLSHADADHAGGA
RAVMQGLKVHRVVSGDVPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKTLQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=578840 KSS92_RS20430 WP_217878666.1 4644755..4646989(-) (comA) [Pseudomonas atacamensis strain SWRI76]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGTAGTGCTGCCAGTGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTTTGCTGTTTGGTTTCACGT
GGGCTTGTTTCAGTGCGCAGTGGGCGCTGACTGACCGCTTGCCACCGGGTCTTGACGGCGAAACCCGTTGGCTTGAAGGG
CGGGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCTTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCGCAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCATGGCTGCCGTGGGCGTGCGGCCTGGCCTTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGTTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGTCATCTCGGCGCGTGGTGGCCGTTGCTGCTGGCATTCAATGGCGTGCTGCTGCTTGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTCGGCGGGCGGCTGGGGGC
CTGGCGGTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATAGGCTTGTGCCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCGGTAGCCAATCTGCTGGCGGTACCGTGGGTCAGCCTCGTGGTGTTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATGGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCGATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTTGACGTCGGGCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACGTAAACTCGATATGCAAGCGCTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTAATGCAGGGATTGAAGGTGCACCGCGTGGTCAGCGGCGATGTGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAATGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCAGATGACAGCA
ATCAGCGTTCCTGTGTGTTGCAGATCGAGGCCAACGGTGAGCGCCTGCTGCTCACCGGCGACATCGATACTCATGCCGAG
CGCGTCCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGTCGCAGTTCATCGTC
GATGGCCCTGCTCAAAACCTTGCAGCCCGAAGCGGTGCTGATCTCCCGAGGCCACGGCAACTCCTTCGGTCACCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGTGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.448	96.64	0.603
comA	Ralstonia pseudosolanacearum GMI1000	35.219	100	0.368