Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS92_RS20425 Genome accession   NZ_CP077081
Coordinates   4644018..4644653 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain SWRI76     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4639018..4649653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS92_RS20390 (KSS92_20390) - 4639412..4639882 (-) 471 WP_016771000.1 (2Fe-2S)-binding protein -
  KSS92_RS20395 (KSS92_20395) murB 4640133..4641152 (-) 1020 WP_217878663.1 UDP-N-acetylmuramate dehydrogenase -
  KSS92_RS20400 (KSS92_20400) - 4641149..4641613 (-) 465 WP_076563814.1 low molecular weight protein-tyrosine-phosphatase -
  KSS92_RS20405 (KSS92_20405) kdsB 4641613..4642377 (-) 765 WP_217878664.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS92_RS20410 (KSS92_20410) - 4642374..4642559 (-) 186 WP_003179363.1 Trm112 family protein -
  KSS92_RS20415 (KSS92_20415) lpxK 4642583..4643593 (-) 1011 WP_217878665.1 tetraacyldisaccharide 4'-kinase -
  KSS92_RS20420 (KSS92_20420) - 4643593..4644021 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  KSS92_RS20425 (KSS92_20425) exbB 4644018..4644653 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS92_RS20430 (KSS92_20430) comA 4644755..4646989 (-) 2235 WP_217878666.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS92_RS20435 (KSS92_20435) - 4647126..4647644 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  KSS92_RS20440 (KSS92_20440) - 4647782..4648561 (-) 780 WP_039760202.1 ABC transporter permease -
  KSS92_RS20445 (KSS92_20445) - 4648558..4649490 (-) 933 WP_217878667.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=578839 KSS92_RS20425 WP_016771007.1 4644018..4644653(-) (exbB) [Pseudomonas atacamensis strain SWRI76]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578839 KSS92_RS20425 WP_016771007.1 4644018..4644653(-) (exbB) [Pseudomonas atacamensis strain SWRI76]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCACTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCAGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858