Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KSS96_RS17575 Genome accession   NZ_CP077079
Coordinates   3896052..3898277 (-) Length   741 a.a.
NCBI ID   WP_225913294.1    Uniprot ID   -
Organism   Pseudomonas asgharzadehiana strain SWRI132     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3891052..3903277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS96_RS17540 (KSS96_17540) murB 3891421..3892440 (-) 1020 WP_065877393.1 UDP-N-acetylmuramate dehydrogenase -
  KSS96_RS17545 (KSS96_17545) - 3892437..3892901 (-) 465 WP_017527227.1 low molecular weight protein-tyrosine-phosphatase -
  KSS96_RS17550 (KSS96_17550) kdsB 3892901..3893665 (-) 765 WP_017527226.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS96_RS17555 (KSS96_17555) - 3893662..3893847 (-) 186 WP_003174668.1 Trm112 family protein -
  KSS96_RS17560 (KSS96_17560) lpxK 3893872..3894882 (-) 1011 WP_065877395.1 tetraacyldisaccharide 4'-kinase -
  KSS96_RS17565 (KSS96_17565) - 3894882..3895310 (-) 429 WP_017527224.1 biopolymer transporter ExbD -
  KSS96_RS17570 (KSS96_17570) exbB 3895307..3895942 (-) 636 WP_017527223.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS96_RS17575 (KSS96_17575) comA 3896052..3898277 (-) 2226 WP_225913294.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS96_RS17580 (KSS96_17580) - 3898413..3898928 (+) 516 WP_017527221.1 DUF2062 domain-containing protein -
  KSS96_RS17585 (KSS96_17585) - 3898932..3900305 (-) 1374 WP_068937036.1 sensor histidine kinase -
  KSS96_RS17590 (KSS96_17590) - 3900289..3901017 (-) 729 WP_065877401.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80394.50 Da        Isoelectric Point: 11.1360

>NTDB_id=578783 KSS96_RS17575 WP_225913294.1 3896052..3898277(-) (comA) [Pseudomonas asgharzadehiana strain SWRI132]
MKTGMFTLALGLLALRFLPALPSVGWLIAMLVLALMLLPFRTFALAFFLLGLSWACISAQWALNDRLQPALDGQTRWLEG
RVIGLPQQTATGVRFDLADSRSRNARLPSRIRVSWHGGPAVRSGERWRLAVTLRRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLTPARHAWRDTVRQRLLAVDAQGREAGLAALVLGDGSGLEAKDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VALLARYGCWPRAWPWLRWACGLAFAAALGYGVLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALVAVLILEPL
ASLQAGFWLSFAAVAVLVLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISVSAPLANLVAVPWISLVVLPLAL
LGSVLLGVPLAGEWLLWLAGGALDGLFRGLAWLAGHVPAWIPAEVPLVCWWVSLAGAVLLLLPKGVPFRVLGWPMLLLAV
FPPREQVPHGRVDVLQLDVGQGQALILRTRHHTLLYDAGPRSGAMDLGARVVVPALKKLGVGALDMMLLSHADADHAGGA
AAVARALPVKRVVGGETGGLPALLDTQPCSSGEQWTWDGVIFELWQWPDATAGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLDSPLALRTDWLQAPHHGSRSSSSWPFLQRLAPGSVLISRGRGNAFGHPHQQVMQRYKALGSRVYDSAEQGAVRLQL
GAFAPPVVARGQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=578783 KSS96_RS17575 WP_225913294.1 3896052..3898277(-) (comA) [Pseudomonas asgharzadehiana strain SWRI132]
ATGAAAACAGGGATGTTTACGTTGGCGCTGGGGCTACTTGCCTTACGTTTCCTGCCGGCGCTGCCGTCAGTGGGGTGGCT
TATAGCCATGTTGGTGTTGGCGTTGATGTTGCTGCCTTTTCGCACCTTTGCACTGGCGTTTTTCCTGCTGGGGCTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCATTGAATGATCGCCTGCAGCCTGCGCTCGATGGTCAGACGCGTTGGCTCGAAGGG
CGTGTGATCGGCTTGCCGCAGCAGACCGCTACGGGAGTGCGTTTCGACTTGGCCGACAGCCGGTCGCGCAATGCGCGGCT
ACCTTCGCGTATCCGGGTATCCTGGCACGGCGGGCCAGCGGTGCGCAGCGGGGAGCGCTGGCGCCTGGCGGTGACACTCA
GGCGACCGTCGGGGCTGCTTAATTTTCACGGGTTTGATCATGAAGCCTGGCTGCTGGCCCAACGCATCGGTGCCACCGGG
TCGGTCAAGGACGGCGAACGCCTGACGCCGGCGCGCCATGCCTGGCGCGACACGGTGCGCCAACGCCTGCTGGCGGTGGA
TGCCCAGGGGCGCGAAGCCGGTCTGGCGGCGTTGGTGCTGGGAGATGGTTCCGGGCTGGAGGCCAAGGACTGGCAGGTGT
TGCAGGATACCGGCACGGTGCATTTGCTGGTGATTTCCGGCCAACACATCGGCTTGCTGGCAGGGTTGATCTACGGGCTG
GTCGCGCTGCTTGCGCGCTACGGTTGCTGGCCCCGCGCCTGGCCATGGCTGCGGTGGGCGTGCGGCCTGGCATTTGCGGC
GGCACTGGGCTATGGCGTGTTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCCTGCGTCATGGTGGGGTTGGTGTTGTTGT
GGCGTTTGCGCTTTCGTCATCTGGGGTTCTGGTGGCCGCTGTTGCTGGCGCTGGTCGCGGTGCTGATCCTTGAACCATTG
GCCAGCCTGCAAGCCGGGTTCTGGTTGTCCTTTGCCGCCGTCGCTGTGCTGGTGCTGGCATTCGGGGGCCGCCTGGGGCC
TTGGAGTGTCTGGCAGGCCTGGACGCGACCGCAATGGTTGATTGCCATCGGTTTGTTTCCGGTGCTGCTGGTGTTGGGGT
TGCCGATCAGCGTCAGTGCGCCGCTGGCCAATTTGGTGGCTGTGCCGTGGATCAGCCTGGTGGTGTTGCCTCTGGCGTTG
CTGGGGAGCGTGCTGTTAGGAGTGCCCCTTGCAGGAGAGTGGCTGCTGTGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CAGAGGTTTGGCATGGCTTGCGGGGCACGTGCCTGCGTGGATACCGGCTGAGGTGCCCCTGGTTTGTTGGTGGGTGAGCC
TGGCGGGCGCGGTGCTGTTGCTGCTGCCCAAGGGCGTACCGTTTCGGGTGTTGGGTTGGCCGATGCTGCTGTTGGCGGTA
TTTCCCCCGCGCGAGCAGGTACCCCATGGACGGGTGGACGTGTTGCAGTTGGATGTGGGGCAGGGGCAGGCGTTGATCCT
GCGCACGCGCCATCACACCTTGCTCTACGATGCGGGCCCGCGCTCGGGGGCGATGGACCTGGGCGCGCGCGTGGTGGTGC
CGGCATTGAAAAAGCTTGGTGTAGGTGCGTTGGACATGATGCTGCTCAGTCATGCCGATGCCGACCACGCCGGTGGCGCG
GCGGCCGTGGCCCGCGCACTGCCGGTCAAGCGTGTCGTGGGCGGCGAAACCGGGGGGCTACCGGCATTGCTCGACACCCA
ACCCTGTAGCAGCGGCGAGCAGTGGACCTGGGACGGCGTGATCTTCGAACTTTGGCAATGGCCTGATGCCACTGCCGGAA
ACCCCAAATCCTGCGTGTTGCAGGTGCAGGCCAATGGTGAGCGGTTACTGCTGACGGGGGATATCGATCGTGCCGCTGAG
CGGGCGTTTCTCGACTCTCCCTTGGCGCTGCGCACCGATTGGCTGCAAGCCCCTCACCATGGCAGCCGCAGTTCATCGTC
GTGGCCTTTTCTTCAGCGGCTGGCGCCTGGGTCGGTGTTGATTTCCCGGGGGCGTGGCAACGCGTTCGGTCATCCTCACC
AGCAGGTCATGCAGCGCTATAAGGCCTTGGGCAGTCGGGTATACGACAGCGCCGAACAGGGGGCCGTGCGCCTGCAATTG
GGGGCCTTCGCACCCCCGGTTGTTGCGCGCGGTCAACGCCGTTTCTGGCGTGAAGCGTTACCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-657)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.673

100

0.372