Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS96_RS17570 Genome accession   NZ_CP077079
Coordinates   3895307..3895942 (-) Length   211 a.a.
NCBI ID   WP_017527223.1    Uniprot ID   A0A2H2YH94
Organism   Pseudomonas asgharzadehiana strain SWRI132     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3890307..3900942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS96_RS17535 (KSS96_17535) - 3890682..3891353 (+) 672 WP_017527229.1 Bax inhibitor-1/YccA family protein -
  KSS96_RS17540 (KSS96_17540) murB 3891421..3892440 (-) 1020 WP_065877393.1 UDP-N-acetylmuramate dehydrogenase -
  KSS96_RS17545 (KSS96_17545) - 3892437..3892901 (-) 465 WP_017527227.1 low molecular weight protein-tyrosine-phosphatase -
  KSS96_RS17550 (KSS96_17550) kdsB 3892901..3893665 (-) 765 WP_017527226.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS96_RS17555 (KSS96_17555) - 3893662..3893847 (-) 186 WP_003174668.1 Trm112 family protein -
  KSS96_RS17560 (KSS96_17560) lpxK 3893872..3894882 (-) 1011 WP_065877395.1 tetraacyldisaccharide 4'-kinase -
  KSS96_RS17565 (KSS96_17565) - 3894882..3895310 (-) 429 WP_017527224.1 biopolymer transporter ExbD -
  KSS96_RS17570 (KSS96_17570) exbB 3895307..3895942 (-) 636 WP_017527223.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS96_RS17575 (KSS96_17575) comA 3896052..3898277 (-) 2226 WP_225913294.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS96_RS17580 (KSS96_17580) - 3898413..3898928 (+) 516 WP_017527221.1 DUF2062 domain-containing protein -
  KSS96_RS17585 (KSS96_17585) - 3898932..3900305 (-) 1374 WP_068937036.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22728.82 Da        Isoelectric Point: 6.8761

>NTDB_id=578782 KSS96_RS17570 WP_017527223.1 3895307..3895942(-) (exbB) [Pseudomonas asgharzadehiana strain SWRI132]
MWELVKSGGWMMLPIILSSVAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGTA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578782 KSS96_RS17570 WP_017527223.1 3895307..3895942(-) (exbB) [Pseudomonas asgharzadehiana strain SWRI132]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCGTCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACTCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGTTGGACAAGGAAAAACTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCAGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTTATCCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGTTTGCTGGGTACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGTTCGGGCATGAGTACCAACGCCGCTGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTTTTCCATCGTTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGTTGGTGGAAGTGGTTCAGGGCGACCGTGACGTGGACCTCGTCGGGGGCACAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H2YH94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844