Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KSS90_RS18610 Genome accession   NZ_CP077077
Coordinates   4165381..4167591 (-) Length   736 a.a.
NCBI ID   WP_217866746.1    Uniprot ID   -
Organism   Pseudomonas maumuensis strain COW77     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4160381..4172591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS90_RS18575 (KSS90_18575) murB 4160707..4161726 (-) 1020 WP_217866744.1 UDP-N-acetylmuramate dehydrogenase -
  KSS90_RS18580 (KSS90_18580) - 4161723..4162187 (-) 465 WP_038705674.1 low molecular weight protein-tyrosine-phosphatase -
  KSS90_RS18585 (KSS90_18585) kdsB 4162187..4162951 (-) 765 WP_038705673.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS90_RS18590 (KSS90_18590) - 4162948..4163133 (-) 186 WP_003247142.1 Trm112 family protein -
  KSS90_RS18595 (KSS90_18595) lpxK 4163167..4164177 (-) 1011 WP_217866745.1 tetraacyldisaccharide 4'-kinase -
  KSS90_RS18600 (KSS90_18600) - 4164177..4164611 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  KSS90_RS18605 (KSS90_18605) exbB 4164608..4165243 (-) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS90_RS18610 (KSS90_18610) comA 4165381..4167591 (-) 2211 WP_217866746.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS90_RS18615 (KSS90_18615) - 4167736..4168377 (+) 642 WP_217866747.1 DUF2062 domain-containing protein -
  KSS90_RS18620 (KSS90_18620) - 4168261..4169040 (-) 780 WP_023631459.1 ABC transporter permease -
  KSS90_RS18625 (KSS90_18625) - 4169037..4169969 (-) 933 WP_046856546.1 ABC transporter ATP-binding protein -
  KSS90_RS18630 (KSS90_18630) - 4170103..4170726 (-) 624 WP_046856547.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79653.41 Da        Isoelectric Point: 10.9016

>NTDB_id=578735 KSS90_RS18610 WP_217866746.1 4165381..4167591(-) (comA) [Pseudomonas maumuensis strain COW77]
MRTGMLALVLGLVSLRFLPVLPPVGWLIPLLLLALACLGTRAWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
RVVGLPTRTERGVRFELEHPESRRAQLPRRLQLSWFAGPELRAGERWRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKTGEQVGQAAADWRDAMRQRLMNVDAHGREAALTALVLGDGAGLAREDWQTLQATGTMHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLAMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLMLCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWISFAVLPLAL
LGTATLPVPGVGEGLLWLAGLSLDGLFRLLAQLARQWPAWLPEPLPLWAWLLVALGALLLLLPRGVPLRLPGAVMLVALW
APREQVPLGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAYGGSDLGESVVLPTLRRLGVRHLDLMLVSHGHADHAGGAA
AVRRGLPVARVLAGEVAGLAPAALCESGERWRWDGVDFELWHWPQGTSSNDRSCVLRVVASGERLLLAGDMEAAAEQAWL
AASEDPRVDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRSNGFGHPHAQVIERYRRHGISIHDTAVEGALRLRLGSQG
AVVGGRAERRFWREGE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=578735 KSS90_RS18610 WP_217866746.1 4165381..4167591(-) (comA) [Pseudomonas maumuensis strain COW77]
ATGCGCACAGGGATGCTGGCGCTGGTGCTCGGGCTGGTGAGCCTGCGTTTTTTGCCCGTTTTGCCGCCGGTCGGGTGGCT
GATTCCGTTGCTGTTGCTGGCCCTGGCCTGTCTGGGTACGCGGGCCTGGCCGCTGGGCTGGTTCGTGCTGGGTGGCTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGTCTGGCCCCGGCGCTGGATGGCCGCACGCTGTGGTTGGAGGGG
CGGGTGGTAGGGCTGCCGACCCGTACGGAGCGCGGCGTGCGCTTCGAGCTGGAGCATCCTGAGTCGCGCCGGGCGCAATT
GCCCAGGCGCCTGCAACTGAGCTGGTTCGCCGGGCCAGAATTGCGCGCCGGTGAGCGCTGGCGCCTGGCGGTGAACCTGC
GCCAGCCCCATGGGCTGCTCAACCCCCACGGTCCGGACCGCGAAGCATTGTTGTTGGCTCGGGGTATCGGCGCCACCGGC
TCGGTCAAGACTGGCGAGCAGGTCGGGCAGGCAGCAGCGGACTGGCGCGATGCCATGCGCCAGCGGCTGATGAATGTGGA
TGCTCACGGCCGCGAGGCGGCGCTGACGGCCCTGGTGCTGGGCGACGGCGCCGGGCTGGCGCGCGAAGACTGGCAGACCC
TGCAGGCCACCGGCACGATGCACCTGCTGGTGATCTCCGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTACGGCCTG
GTCGCGGGCCTGGCACGGCTGGGCGCCTGGCCATCGCGCTGGCCGTGGCTGCCTTGGGCTTGCGGCCTGGCCATGGCAGC
GGCATTGGGCTACGGCTGGTTGGCCGGCTTCGGCGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTAT
GGCGCCTGCGTTTCAGGCACCTGGGGGCAGCCTTGCCGTTGCTGCTGGCGTTGTCGGGGGTGTTGCTGATCAATCCATTG
GCCAGCCTGCTGCCGGGTTTCTGGCTGTCGTTTGCCGCGGTTGGCGTGCTGATGCTGTGCTTCTCTGCCCGGCTCGGCGC
CTGGCGGCCCTGGCAGGCCTGGAGCCGCGCCCAGTGGGTAATCGCCGTGGGCCTGTTGCCAGTGCTGCTGGCGCTGGGGC
TGCCGATCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCGCTGGCCTTG
CTCGGCACGGCGACGTTGCCGGTGCCTGGGGTGGGGGAAGGGCTGCTGTGGCTGGCGGGCCTTTCGCTGGATGGGCTGTT
TCGCCTGCTGGCGCAGCTTGCGCGGCAGTGGCCCGCATGGCTGCCCGAACCGTTGCCGCTGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGTTGCTGCTGCTGCCTCGGGGTGTGCCGTTGCGCTTGCCGGGCGCGGTGATGCTGGTGGCCTTGTGG
GCGCCGCGCGAGCAGGTGCCCCTTGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCTTGGCGGTGCTGCTGCG
CACCCGTCATCACGCGCTGCTGTACGACGCCGGGCCCGCGTACGGGGGCAGCGACCTGGGGGAGAGCGTAGTGTTGCCGA
CCTTGCGCAGACTGGGTGTGAGGCACCTCGACCTGATGCTGGTCAGCCACGGTCACGCCGATCATGCCGGCGGTGCGGCG
GCGGTGCGCCGGGGGCTGCCGGTGGCGCGGGTGCTGGCCGGGGAGGTTGCCGGGCTTGCGCCTGCCGCGCTGTGCGAAAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAAGGCACGTCCAGTAACGACCGTTCCT
GCGTGCTGCGGGTGGTGGCCAGTGGCGAGCGCCTGCTGCTGGCCGGCGACATGGAGGCCGCGGCGGAGCAGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGCGTCGACTGGTTGCAGGCGCCGCACCACGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCACTGGCGCCTCGCGGGGTGATGATTTCGCGGGGGCGGAGTAACGGTTTCGGGCATCCGCATGCGCAGGTGATCG
AGCGCTATCGACGGCATGGGATCAGCATTCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGCGCCTGGGGAGTCAGGGT
GCAGTGGTCGGGGGGCGCGCGGAGCGCAGGTTCTGGCGGGAGGGCGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-675)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.611

97.826

0.573
  comA Ralstonia pseudosolanacearum GMI1000

35.8

100

0.408