Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS90_RS18605 Genome accession   NZ_CP077077
Coordinates   4164608..4165243 (-) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas maumuensis strain COW77     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4159608..4170243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS90_RS18575 (KSS90_18575) murB 4160707..4161726 (-) 1020 WP_217866744.1 UDP-N-acetylmuramate dehydrogenase -
  KSS90_RS18580 (KSS90_18580) - 4161723..4162187 (-) 465 WP_038705674.1 low molecular weight protein-tyrosine-phosphatase -
  KSS90_RS18585 (KSS90_18585) kdsB 4162187..4162951 (-) 765 WP_038705673.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS90_RS18590 (KSS90_18590) - 4162948..4163133 (-) 186 WP_003247142.1 Trm112 family protein -
  KSS90_RS18595 (KSS90_18595) lpxK 4163167..4164177 (-) 1011 WP_217866745.1 tetraacyldisaccharide 4'-kinase -
  KSS90_RS18600 (KSS90_18600) - 4164177..4164611 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  KSS90_RS18605 (KSS90_18605) exbB 4164608..4165243 (-) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS90_RS18610 (KSS90_18610) comA 4165381..4167591 (-) 2211 WP_217866746.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS90_RS18615 (KSS90_18615) - 4167736..4168377 (+) 642 WP_217866747.1 DUF2062 domain-containing protein -
  KSS90_RS18620 (KSS90_18620) - 4168261..4169040 (-) 780 WP_023631459.1 ABC transporter permease -
  KSS90_RS18625 (KSS90_18625) - 4169037..4169969 (-) 933 WP_046856546.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=578734 KSS90_RS18605 WP_028690976.1 4164608..4165243(-) (exbB) [Pseudomonas maumuensis strain COW77]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578734 KSS90_RS18605 WP_028690976.1 4164608..4165243(-) (exbB) [Pseudomonas maumuensis strain COW77]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTACCGATCATCCTGAGCTCCATCGCTGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAACTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTACTGGCCGGCGGTATCTCCAAGGCCTTGGTCACTACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTTGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829