Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KK0981_RS09500 Genome accession   NZ_AP017971
Coordinates   1775928..1776638 (+) Length   236 a.a.
NCBI ID   WP_050201350.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770928..1781638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS09475 (KK0981_38490) - 1771472..1771720 (-) 249 WP_000364990.1 YneF family protein -
  KK0981_RS09485 (KK0981_38500) treC 1771976..1773601 (-) 1626 WP_000171199.1 alpha,alpha-phosphotrehalase -
  KK0981_RS09495 (KK0981_38510) treP 1773779..1775743 (-) 1965 WP_000514348.1 PTS system trehalose-specific EIIBC component -
  KK0981_RS09500 (KK0981_38520) treR 1775928..1776638 (+) 711 WP_050201350.1 trehalose operon repressor Regulator
  KK0981_RS09505 - 1776793..1778119 (+) 1327 Protein_1797 transposase -
  KK0981_RS09510 (KK0981_38560) - 1778194..1779120 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  KK0981_RS09515 (KK0981_38570) amiE 1779131..1780198 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  KK0981_RS09520 (KK0981_38580) amiD 1780207..1781133 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27637.80 Da        Isoelectric Point: 8.9698

>NTDB_id=57873 KK0981_RS09500 WP_050201350.1 1775928..1776638(+) (treR) [Streptococcus pneumoniae strain KK0981]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENSLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=57873 KK0981_RS09500 WP_050201350.1 1775928..1776638(+) (treR) [Streptococcus pneumoniae strain KK0981]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATAGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment