Detailed information NTG0578703

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KSS94_RS07700
• Genome accession: NZ_CP077076
• Coordinates: 1699719..1701932 (+)
• Length: 737 a.a.
• NCBI ID: WP_217842421.1
• Uniprot ID: -
• Organism: Pseudomonas fakonensis strain COW40
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1694719..1706932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS94_RS07670 (KSS94_07670)	-	1695670..1695924 (-)	255	WP_217842415.1	DUF3077 domain-containing protein	-
KSS94_RS07675 (KSS94_07675)	-	1695921..1696148 (-)	228	WP_217842416.1	hypothetical protein	-
KSS94_RS07680 (KSS94_07680)	-	1696579..1697202 (+)	624	WP_217842417.1	glutathione S-transferase	-
KSS94_RS07685 (KSS94_07685)	-	1697345..1698277 (+)	933	WP_217842418.1	ABC transporter ATP-binding protein	-
KSS94_RS07690 (KSS94_07690)	-	1698274..1699053 (+)	780	WP_217842419.1	ABC transporter permease	-
KSS94_RS07695 (KSS94_07695)	-	1698937..1699575 (-)	639	WP_217842420.1	DUF2062 domain-containing protein	-
KSS94_RS07700 (KSS94_07700)	comA	1699719..1701932 (+)	2214	WP_217842421.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KSS94_RS07705 (KSS94_07705)	exbB	1702230..1702865 (+)	636	WP_028690976.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KSS94_RS07710 (KSS94_07710)	-	1702862..1703296 (+)	435	WP_217842422.1	biopolymer transporter ExbD	-
KSS94_RS07715 (KSS94_07715)	lpxK	1703296..1704300 (+)	1005	WP_217842423.1	tetraacyldisaccharide 4'-kinase	-
KSS94_RS07720 (KSS94_07720)	-	1704341..1704526 (+)	186	WP_003247142.1	Trm112 family protein	-
KSS94_RS07725 (KSS94_07725)	kdsB	1704523..1705287 (+)	765	WP_217842424.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KSS94_RS07730 (KSS94_07730)	-	1705287..1705751 (+)	465	WP_217842425.1	low molecular weight protein-tyrosine-phosphatase	-
KSS94_RS07735 (KSS94_07735)	murB	1705748..1706767 (+)	1020	WP_217842426.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79082.53 Da
• Isoelectric Point: 10.0207

>NTDB_id=578703 KSS94_RS07700 WP_217842421.1 1699719..1701932(+) (comA) [Pseudomonas fakonensis strain COW40]
MRTGMLALALGLLSLRLLPALPSVGWLILLLILALACLRTRLWPLGCLVLGACWACWSAQQALDGRLAAQLDGRTLWLEG
QVTGLPARTGQGVRFELEQPWSRRGELVLPQRLQLSWFDGPELRAGERWRLAVNLRRPHGLLNPHGPDREASLLARRIGA
TGTVKAGERVGEAAVSWRDGIRQRLLATDAHGREAVLAALVLGDGSGLARDDWNTLQATGTVHLLVISGQHIGLLAGLVY
GLVAGMARLGLWPARMPWLPWACGLALTAALAYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAATPLLIALLGVLLVE
PLASLLPGFWLSFGAVAVLALCFSARLGAWRPWQAWTRAQWVIAVGLLPLLLALGLPVSLTAPLANLLAVPWLSLAVLPP
ALLGTALLPVPLGGEGLLWLAGFSLDGLFSVLGWVAVQHPPWVPEPLPLWAWLLVCLGALLVLLPAGVPLRLPGAMLLLA
LWAPREQVPHGQVQVWQLDVGQGLAVLLRTRQHSLLYDAGPAQGDSDLGESVVLPTLRKLGVRQLDLLLVSHAHADHAGG
AGAIRRGLPVLRELGGEGTGGAICSSGERWQWDGVAFELWHWPQGPSSNERSCVLRVQAGGERLLLAGDMEAGAERAWLA
SNADTRIDWLQAPHHGSRSSSTEPFIQALAPRGVLISRGRHNSFGHPHAQVIERYGRHGVQVHDTALDGALGLRLGSQGG
VVGERAGRRFWREGGGS

Nucleotide

• Length: 2214 bp

>NTDB_id=578703 KSS94_RS07700 WP_217842421.1 1699719..1701932(+) (comA) [Pseudomonas fakonensis strain COW40]
ATGCGCACAGGGATGCTTGCGCTGGCGCTCGGGCTGCTCAGCCTGCGCCTTCTACCCGCCTTGCCATCGGTCGGCTGGCT
GATCCTCCTACTGATATTGGCGCTTGCCTGCCTGCGTACACGGCTGTGGCCGCTGGGTTGCTTGGTGCTGGGCGCCTGCT
GGGCCTGTTGGTCGGCGCAGCAGGCACTGGATGGCCGCCTGGCCGCGCAGCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CAGGTGACCGGCTTGCCGGCGCGTACCGGGCAGGGGGTGCGCTTCGAGCTGGAACAGCCCTGGTCACGCCGCGGCGAGCT
GGTATTGCCGCAACGCCTGCAACTGAGCTGGTTCGACGGCCCCGAGCTGCGCGCGGGCGAGCGCTGGCGCCTGGCGGTCA
ACCTACGCCGCCCCCACGGGCTGCTCAACCCCCACGGGCCGGACCGCGAGGCCTCGCTGCTGGCGCGGCGCATCGGTGCC
ACCGGCACGGTCAAGGCCGGCGAGCGTGTGGGGGAGGCGGCGGTCAGTTGGCGCGACGGCATTCGCCAGCGCTTGCTGGC
CACCGATGCCCATGGCCGCGAGGCGGTGCTGGCGGCCTTGGTGCTGGGCGATGGCAGCGGGCTGGCACGGGACGACTGGA
ACACCCTGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGCTGGTCTAT
GGCCTTGTGGCGGGGATGGCGCGGCTTGGCCTGTGGCCTGCGCGGATGCCCTGGCTGCCCTGGGCCTGCGGCCTGGCCCT
GACGGCGGCGCTGGCCTATGGCTGGTTGGCGGGCTTTGGCGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGT
TGCTGTGGCGCTTGCGCTTTCGTCACCTGGGCGCCGCTACGCCGCTGCTGATCGCGTTACTCGGGGTGTTGCTGGTGGAG
CCGCTGGCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGGTGCTGGCGCTGTGCTTTTCGGCCCGGCT
AGGTGCCTGGCGGCCCTGGCAGGCCTGGACCCGGGCGCAGTGGGTGATTGCCGTGGGCCTGCTGCCGTTGCTGCTGGCGT
TGGGGTTGCCGGTCAGCCTCACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGCTGAGCCTGGCGGTACTGCCACCG
GCGCTGCTGGGTACTGCGCTGTTGCCGGTGCCGTTGGGCGGGGAGGGGCTGTTGTGGCTGGCCGGTTTTTCGCTGGACGG
GCTGTTCAGCGTGCTGGGCTGGGTGGCCGTGCAGCACCCGCCCTGGGTGCCCGAGCCCTTGCCGCTGTGGGCCTGGCTGC
TGGTGTGCCTGGGCGCGCTGCTGGTGCTGTTGCCTGCCGGGGTGCCGCTGCGTTTGCCGGGGGCGATGCTGCTGCTGGCG
CTGTGGGCGCCGCGTGAGCAGGTGCCCCATGGCCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTACT
GCTGCGCACCCGCCAGCACAGCCTGCTGTACGACGCAGGGCCGGCGCAGGGCGACAGCGACCTGGGCGAAAGCGTGGTGC
TGCCGACCTTGCGCAAGCTGGGGGTGAGACAGCTGGACCTGCTGCTGGTCAGCCATGCCCATGCCGACCATGCCGGTGGC
GCCGGCGCCATTCGCCGGGGCCTGCCCGTGTTGCGCGAGCTGGGCGGGGAGGGCACCGGCGGGGCGATTTGCAGCAGCGG
TGAGCGCTGGCAGTGGGATGGCGTGGCGTTCGAGCTGTGGCATTGGCCGCAGGGGCCGTCGAGCAACGAGCGCTCCTGTG
TGCTGCGGGTGCAGGCGGGCGGCGAGCGCCTGCTGTTGGCCGGCGACATGGAGGCCGGTGCCGAGCGGGCCTGGCTTGCG
AGTAACGCCGATACCCGCATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGGTCGTCGTCCACTGAGCCGTTCATCCA
GGCCCTGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGGCACAACAGCTTTGGGCACCCGCATGCGCAGGTGATCGAGC
GCTATGGGCGCCATGGGGTGCAGGTGCATGACACGGCGCTTGACGGTGCGCTGGGGTTGCGCTTGGGCAGCCAGGGCGGT
GTGGTGGGGGAGCGGGCCGGGCGCAGGTTTTGGCGGGAGGGGGGAGGCAGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-673)

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (21-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.807	97.829	0.575
comA	Ralstonia pseudosolanacearum GMI1000	37.056	100	0.396