Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS94_RS07705 Genome accession   NZ_CP077076
Coordinates   1702230..1702865 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas fakonensis strain COW40     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1697230..1707865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS94_RS07685 (KSS94_07685) - 1697345..1698277 (+) 933 WP_217842418.1 ABC transporter ATP-binding protein -
  KSS94_RS07690 (KSS94_07690) - 1698274..1699053 (+) 780 WP_217842419.1 ABC transporter permease -
  KSS94_RS07695 (KSS94_07695) - 1698937..1699575 (-) 639 WP_217842420.1 DUF2062 domain-containing protein -
  KSS94_RS07700 (KSS94_07700) comA 1699719..1701932 (+) 2214 WP_217842421.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS94_RS07705 (KSS94_07705) exbB 1702230..1702865 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS94_RS07710 (KSS94_07710) - 1702862..1703296 (+) 435 WP_217842422.1 biopolymer transporter ExbD -
  KSS94_RS07715 (KSS94_07715) lpxK 1703296..1704300 (+) 1005 WP_217842423.1 tetraacyldisaccharide 4'-kinase -
  KSS94_RS07720 (KSS94_07720) - 1704341..1704526 (+) 186 WP_003247142.1 Trm112 family protein -
  KSS94_RS07725 (KSS94_07725) kdsB 1704523..1705287 (+) 765 WP_217842424.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS94_RS07730 (KSS94_07730) - 1705287..1705751 (+) 465 WP_217842425.1 low molecular weight protein-tyrosine-phosphatase -
  KSS94_RS07735 (KSS94_07735) murB 1705748..1706767 (+) 1020 WP_217842426.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=578704 KSS94_RS07705 WP_028690976.1 1702230..1702865(+) (exbB) [Pseudomonas fakonensis strain COW40]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578704 KSS94_RS07705 WP_028690976.1 1702230..1702865(+) (exbB) [Pseudomonas fakonensis strain COW40]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCGCCGCACTTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTTGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACGGTGTTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829