Detailed information NTG0578687

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KSS93_RS11060
• Genome accession: NZ_CP077075
• Coordinates: 2488735..2490948 (+)
• Length: 737 a.a.
• NCBI ID: WP_217888307.1
• Uniprot ID: -
• Organism: Pseudomonas xanthosomatis strain COR54
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2483735..2495948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS93_RS11030 (KSS93_11030)	-	2484308..2484571 (-)	264	WP_217888302.1	DUF3077 domain-containing protein	-
KSS93_RS11035 (KSS93_11035)	-	2484568..2484795 (-)	228	WP_217888303.1	hypothetical protein	-
KSS93_RS11040 (KSS93_11040)	-	2485595..2486218 (+)	624	WP_217888304.1	glutathione S-transferase	-
KSS93_RS11045 (KSS93_11045)	-	2486361..2487293 (+)	933	WP_217888305.1	ABC transporter ATP-binding protein	-
KSS93_RS11050 (KSS93_11050)	-	2487290..2488069 (+)	780	WP_217842419.1	ABC transporter permease	-
KSS93_RS11055 (KSS93_11055)	-	2487953..2488591 (-)	639	WP_217888306.1	DUF2062 domain-containing protein	-
KSS93_RS11060 (KSS93_11060)	comA	2488735..2490948 (+)	2214	WP_217888307.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KSS93_RS11065 (KSS93_11065)	exbB	2491251..2491886 (+)	636	WP_028690976.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KSS93_RS11070 (KSS93_11070)	-	2491883..2492317 (+)	435	WP_217888308.1	biopolymer transporter ExbD	-
KSS93_RS11075 (KSS93_11075)	lpxK	2492317..2493321 (+)	1005	WP_217888309.1	tetraacyldisaccharide 4'-kinase	-
KSS93_RS11080 (KSS93_11080)	-	2493362..2493547 (+)	186	WP_003247142.1	Trm112 family protein	-
KSS93_RS11085 (KSS93_11085)	kdsB	2493544..2494308 (+)	765	WP_217888310.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KSS93_RS11090 (KSS93_11090)	-	2494308..2494772 (+)	465	WP_217888311.1	low molecular weight protein-tyrosine-phosphatase	-
KSS93_RS11095 (KSS93_11095)	murB	2494769..2495788 (+)	1020	WP_217888312.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79182.82 Da
• Isoelectric Point: 10.6259

>NTDB_id=578687 KSS93_RS11060 WP_217888307.1 2488735..2490948(+) (comA) [Pseudomonas xanthosomatis strain COR54]
MRTGMLALALGLLSLRFLPALPSVGWLIFLLLLALVCLRTRLWPLGCFVLGACWACWSAQQALDGRLAAQLDGRTLWLEG
RVTGLPARTGQGVRFELEQPLSRRAELALPQRLQLSWFDGPELRAGERWRLAVNLRRPHGLLNPHGPDREASLLARRIGA
TGTVKAGERVGTVAVSWRDGIRQRLLATDAHGREAVLAALVLGDGSGLAREDWNTLQATGTVHLLVISGQHIGLLAGLVY
GLVAGLARVGLWPARMPWLPWACGLALTAALAYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAATPLLMALLGVLLVE
PLASLLPGFWLSFGAVAVLALCFSARLGAWRPWQAWTRAQWVIGVGLLPLLLALGLPVSLTAPLANLLAVPWLSLAVLPL
ALLGTALLPLPLAGEGLLWLAGFSLDGLFTVLGWVAVQHPPWIPEPLPLWAWLLVCLGALLVLLPAGVPLRLPGAMLLLA
LWAPREQVPHGQVQVWQLDVGQGLAVLLRTRQHSLLYDAGPAQGDSDLGESVVLPTLRKLGVKQLDLLLISHAHADHAGG
AAAIRRGLPVLRELGGEGTGGAICNSGERWQWDGVAFELWHWPQGPSSNERSCVLRVQAGGERLLLAGDMEAAAERAWLA
SNADTRIDWLQAPHHGSRSSSTEAFIQALAPRGVLISRGRHNSFGHPHVQVIERYGRHGVQVHDTAIDGALGLRLGSQGG
VVGERAGRRFWRGGGGS

Nucleotide

• Length: 2214 bp

>NTDB_id=578687 KSS93_RS11060 WP_217888307.1 2488735..2490948(+) (comA) [Pseudomonas xanthosomatis strain COR54]
ATGCGCACAGGGATGCTTGCGCTGGCGCTCGGGCTGCTCAGCCTGCGCTTTCTACCCGCCTTGCCATCGGTCGGCTGGCT
GATCTTCTTACTGTTATTGGCGCTTGTCTGCCTGCGCACACGGCTGTGGCCGCTGGGCTGCTTTGTGCTGGGCGCCTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGGCCGCCTGGCCGCGCAGCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGACGGGCTTGCCGGCGCGCACCGGGCAGGGGGTGCGCTTCGAGCTTGAACAGCCACTGTCACGCCGGGCTGAACT
GGCGCTGCCGCAACGCCTGCAACTGAGCTGGTTCGACGGCCCTGAACTGCGCGCGGGCGAGCGCTGGCGCCTGGCGGTCA
ACCTGCGTCGGCCCCACGGGCTGCTCAACCCCCATGGGCCGGACCGCGAAGCCTCGCTGCTGGCGCGGCGTATCGGTGCC
ACCGGCACGGTCAAGGCCGGCGAGCGTGTGGGGACGGTGGCGGTCAGTTGGCGCGACGGCATTCGCCAGCGCTTGCTGGC
CACCGATGCCCATGGCCGCGAGGCGGTGCTGGCGGCATTGGTGCTGGGCGATGGCAGTGGCTTGGCGCGGGAGGACTGGA
ACACCTTGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGCTGGTCTAT
GGCCTTGTGGCAGGGCTGGCGCGGGTCGGCCTGTGGCCCGCGCGGATGCCCTGGCTGCCCTGGGCTTGCGGCCTGGCCCT
GACGGCGGCGCTGGCCTACGGCTGGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGT
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGCTGCTACGCCGCTGCTGATGGCGTTGCTCGGGGTGTTGCTGGTGGAG
CCGTTGGCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCGGTGCGGTTGCGGTGCTGGCGCTGTGCTTTTCGGCCCGGCT
GGGTGCCTGGCGGCCCTGGCAGGCCTGGACCCGGGCGCAGTGGGTGATTGGCGTGGGCCTGCTGCCCTTGCTGCTGGCGT
TGGGGTTACCGGTCAGCCTCACGGCGCCGTTGGCCAACCTGCTCGCAGTGCCCTGGCTGAGCCTGGCGGTACTGCCGTTG
GCACTGCTGGGTACTGCGCTGTTGCCGCTGCCGTTGGCCGGGGAGGGGCTGTTGTGGCTGGCCGGTTTTTCGCTGGACGG
GCTGTTCACTGTGCTGGGCTGGGTAGCGGTGCAGCATCCGCCCTGGATACCCGAGCCCTTGCCGCTGTGGGCCTGGCTGC
TGGTGTGCCTGGGCGCATTGCTGGTGCTGTTGCCCGCCGGGGTACCGCTGCGTTTGCCGGGGGCGATGCTGCTGCTGGCG
CTGTGGGCGCCGCGCGAGCAGGTGCCCCATGGCCAGGTGCAGGTATGGCAACTGGATGTCGGCCAAGGCCTGGCGGTGCT
GCTGCGCACTCGCCAGCACAGCCTGCTGTACGACGCGGGCCCCGCGCAGGGCGACAGCGACCTGGGCGAAAGCGTGGTGC
TGCCTACCTTGCGCAAGCTGGGGGTAAAACAGCTGGATCTGCTGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGC
GCCGCTGCCATTCGCCGGGGCTTGCCGGTGCTGCGCGAGCTGGGCGGGGAGGGCACCGGAGGGGCGATTTGCAACAGCGG
TGAGCGCTGGCAGTGGGATGGTGTGGCGTTCGAGCTGTGGCACTGGCCGCAGGGGCCATCGAGCAACGAGCGCTCCTGTG
TACTGCGGGTGCAGGCGGGCGGCGAGCGATTGCTGTTGGCCGGCGACATGGAGGCTGCTGCCGAGCGGGCCTGGCTTGCG
AGTAACGCAGATACCCGCATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGGTCGTCGTCCACCGAGGCGTTCATCCA
GGCCTTGGCGCCGCGCGGGGTGTTGATATCGCGGGGCCGGCACAACAGCTTCGGGCACCCGCATGTGCAGGTGATCGAGC
GCTATGGGCGCCATGGGGTGCAGGTGCATGACACGGCGATTGACGGTGCGCTGGGGTTGCGCTTGGGCAGCCAGGGTGGG
GTGGTGGGGGAGCGGGCCGGGCGCAGGTTCTGGCGGGGTGGTGGAGGCAGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-169)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-674)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.472	97.693	0.571
comA	Ralstonia pseudosolanacearum GMI1000	37.831	100	0.407