Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS93_RS11065 Genome accession   NZ_CP077075
Coordinates   2491251..2491886 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas xanthosomatis strain COR54     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486251..2496886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS93_RS11045 (KSS93_11045) - 2486361..2487293 (+) 933 WP_217888305.1 ABC transporter ATP-binding protein -
  KSS93_RS11050 (KSS93_11050) - 2487290..2488069 (+) 780 WP_217842419.1 ABC transporter permease -
  KSS93_RS11055 (KSS93_11055) - 2487953..2488591 (-) 639 WP_217888306.1 DUF2062 domain-containing protein -
  KSS93_RS11060 (KSS93_11060) comA 2488735..2490948 (+) 2214 WP_217888307.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS93_RS11065 (KSS93_11065) exbB 2491251..2491886 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS93_RS11070 (KSS93_11070) - 2491883..2492317 (+) 435 WP_217888308.1 biopolymer transporter ExbD -
  KSS93_RS11075 (KSS93_11075) lpxK 2492317..2493321 (+) 1005 WP_217888309.1 tetraacyldisaccharide 4'-kinase -
  KSS93_RS11080 (KSS93_11080) - 2493362..2493547 (+) 186 WP_003247142.1 Trm112 family protein -
  KSS93_RS11085 (KSS93_11085) kdsB 2493544..2494308 (+) 765 WP_217888310.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS93_RS11090 (KSS93_11090) - 2494308..2494772 (+) 465 WP_217888311.1 low molecular weight protein-tyrosine-phosphatase -
  KSS93_RS11095 (KSS93_11095) murB 2494769..2495788 (+) 1020 WP_217888312.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=578688 KSS93_RS11065 WP_028690976.1 2491251..2491886(+) (exbB) [Pseudomonas xanthosomatis strain COR54]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578688 KSS93_RS11065 WP_028690976.1 2491251..2491886(+) (exbB) [Pseudomonas xanthosomatis strain COR54]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCTGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829