Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KSS95_RS10305 Genome accession   NZ_CP077073
Coordinates   2281092..2283299 (+) Length   735 a.a.
NCBI ID   WP_217853566.1    Uniprot ID   -
Organism   Pseudomonas muyukensis strain COW39     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2276092..2288299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS95_RS10285 (KSS95_10285) - 2277959..2278582 (+) 624 WP_217853562.1 glutathione S-transferase -
  KSS95_RS10290 (KSS95_10290) - 2278715..2279647 (+) 933 WP_217853563.1 ABC transporter ATP-binding protein -
  KSS95_RS10295 (KSS95_10295) - 2279644..2280423 (+) 780 WP_217853564.1 ABC transporter permease -
  KSS95_RS10300 (KSS95_10300) - 2280307..2280948 (-) 642 WP_217853565.1 DUF2062 domain-containing protein -
  KSS95_RS10305 (KSS95_10305) comA 2281092..2283299 (+) 2208 WP_217853566.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS95_RS10310 (KSS95_10310) exbB 2283530..2284165 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS95_RS10315 (KSS95_10315) - 2284162..2284596 (+) 435 WP_217853567.1 biopolymer transporter ExbD -
  KSS95_RS10320 (KSS95_10320) lpxK 2284596..2285606 (+) 1011 WP_217853568.1 tetraacyldisaccharide 4'-kinase -
  KSS95_RS10325 (KSS95_10325) - 2285648..2285833 (+) 186 WP_217853569.1 Trm112 family protein -
  KSS95_RS10330 (KSS95_10330) kdsB 2285830..2286594 (+) 765 WP_217853570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS95_RS10335 (KSS95_10335) - 2286594..2287058 (+) 465 WP_217853571.1 low molecular weight protein-tyrosine-phosphatase -
  KSS95_RS10340 (KSS95_10340) murB 2287055..2288074 (+) 1020 WP_217853572.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78995.58 Da        Isoelectric Point: 10.7620

>NTDB_id=578640 KSS95_RS10305 WP_217853566.1 2281092..2283299(+) (comA) [Pseudomonas muyukensis strain COW39]
MRTGMLALALGLLSLRFLPALPPVGWLLALSLLGLACLRTRGWPLGCYLLGLCWACGSAQQALDDRLAMALDGRTLWLEG
RVVGLPARSERGVRFELEQPRSRRAELPQHLQLTWFDGPALHAGERWRLAVNLRRPHGLLNPHGPDREATLLARRIGATG
TVKAGEWLGAPALDWRDGIRQRLLAVDAQGREAALAALVLGDGAGLARQDWQALQATGTVHLLVISGQHIGLLAGLVYGA
VAGLARLGGWPRRLPWLPWACGLAMGAALLYGWLAGYGVPVQRACLMLAVVLLWRLRFRQLGVGLPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLALCFSARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWLSLAVLPLAL
LGTALLPLPWLGEGLLWLAGVSLHGLFGWLAWAAGLVPAWTGEPLPLWAGLLVGLGALLALLPRGVPLRVPGAVLLLALW
VPREQVPHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPAMGESDLGESVVLPTLRKLGVRQLDLMLISHAHADHAGGAG
AIRRGLPVLRELGGENTGGAICSSGERWQWDGVEFELWHWPQGPSSNERSCVLRVEANGERLLLAGDMEAGAERAWLAGN
ADTRIDWLQAPHHGSRTSSSEVMLRAMAPRGVLISRGRHNGFGHPHPQVIERYRRHGVRVHDTALEGALGLRLGSQGGAV
GERAGRRFWRGGGGS

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=578640 KSS95_RS10305 WP_217853566.1 2281092..2283299(+) (comA) [Pseudomonas muyukensis strain COW39]
ATGCGTACAGGGATGCTGGCGCTCGCGCTCGGGCTGTTGAGCCTGCGTTTTCTGCCTGCTTTGCCACCGGTCGGGTGGTT
GCTTGCACTGTCATTGCTGGGGCTGGCCTGCCTGCGTACGCGAGGCTGGCCGCTTGGCTGCTACCTGTTGGGGCTGTGCT
GGGCGTGCGGATCGGCACAGCAGGCACTGGATGATCGGCTGGCCATGGCACTGGACGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCAGCGAACGGGGTGTGCGTTTCGAGCTGGAGCAGCCCCGTTCGCGTCGGGCTGAACT
GCCGCAACATCTACAACTGACCTGGTTCGATGGCCCCGCACTGCACGCCGGGGAGCGCTGGCGGCTGGCGGTCAACCTGC
GCCGCCCGCATGGGTTGCTCAACCCCCATGGCCCGGACCGCGAGGCGACCCTGCTGGCGCGGCGCATCGGCGCCACCGGC
ACGGTCAAGGCGGGTGAGTGGCTCGGCGCTCCCGCCCTCGATTGGCGCGACGGCATCCGCCAACGCTTGCTGGCGGTCGA
TGCCCAGGGGCGTGAGGCGGCCCTGGCTGCGCTGGTGCTGGGCGATGGCGCGGGGTTGGCGCGCCAGGATTGGCAGGCCC
TGCAAGCCACCGGCACGGTCCATTTGCTGGTGATCTCCGGGCAGCACATCGGGCTGCTGGCCGGGTTGGTGTATGGCGCG
GTGGCCGGGCTGGCCCGCTTGGGCGGGTGGCCGCGGCGCCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGGGGC
TGCGCTGCTGTACGGCTGGCTGGCGGGGTATGGCGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGCTGCTGT
GGCGCCTGCGCTTTCGCCAGCTGGGCGTGGGGCTGCCCTTGTTGCTGGCGCTGCTGGGGGTGTTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGCTTCTGGCTGTCGTTTGCCGCCGTGGCGGTGCTGGCGCTGTGTTTTTCTGCCCGGCTGGGCGC
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCCGTGGGCCTGCTGCCGGTGTTGCTGGCGCTGGGCC
TGCCGATCAGCCTTACGGCGCCGCTGGCCAACTTGCTGGCGGTGCCGTGGCTGAGCCTGGCGGTGCTGCCCTTGGCCTTG
CTCGGTACCGCGCTGCTGCCGCTGCCTTGGCTGGGGGAGGGGCTGTTGTGGTTGGCGGGCGTTTCGCTGCACGGCCTGTT
TGGCTGGCTTGCCTGGGCGGCAGGGCTTGTGCCGGCGTGGACAGGCGAGCCGCTGCCGCTGTGGGCTGGGCTGCTGGTGG
GGCTTGGCGCGTTGCTGGCGCTGTTGCCTCGGGGTGTGCCCTTGCGTGTGCCGGGTGCGGTCCTGTTGCTGGCCTTGTGG
GTGCCACGCGAGCAGGTGCCACATGGCCAGGTCGAAGTCTGGCAGTTGGACGTTGGTCAAGGGCTGGCGGTGTTGCTGCG
CACGCGCCAGCACAGCCTGCTGTATGACGCAGGCCCTGCGATGGGGGAGAGCGACCTGGGCGAAAGCGTGGTGCTGCCGA
CCTTGCGCAAGCTTGGGGTACGGCAGCTGGACCTGATGCTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCCGGG
GCCATTCGCCGGGGCCTGCCGGTGTTGCGCGAGCTGGGCGGGGAGAACACTGGCGGGGCGATTTGCAGCAGCGGTGAGCG
CTGGCAGTGGGATGGCGTCGAGTTCGAGCTTTGGCACTGGCCGCAGGGGCCGTCGAGTAACGAGCGTTCTTGCGTGCTGC
GGGTCGAGGCCAATGGTGAGCGTTTGCTGCTGGCAGGCGACATGGAGGCCGGTGCCGAGCGGGCCTGGCTGGCGGGCAAT
GCCGATACCCGCATTGATTGGCTGCAGGCGCCGCACCATGGCAGCCGCACCTCGTCCAGCGAGGTGATGCTAAGGGCCAT
GGCCCCGCGCGGGGTGTTGATATCGCGCGGGCGGCACAATGGCTTCGGGCATCCGCATCCACAGGTTATCGAGCGTTATC
GGCGGCACGGGGTGCGGGTGCATGACACCGCCCTGGAGGGGGCGCTGGGGTTGCGGTTGGGCAGTCAGGGTGGGGCGGTG
GGGGAGCGCGCCGGGCGCAGGTTTTGGCGGGGTGGTGGAGGCAGTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-168)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.749

97.687

0.584
  comA Ralstonia pseudosolanacearum GMI1000

36.445

100

0.388