Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS95_RS10310 Genome accession   NZ_CP077073
Coordinates   2283530..2284165 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas muyukensis strain COW39     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2278530..2289165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS95_RS10290 (KSS95_10290) - 2278715..2279647 (+) 933 WP_217853563.1 ABC transporter ATP-binding protein -
  KSS95_RS10295 (KSS95_10295) - 2279644..2280423 (+) 780 WP_217853564.1 ABC transporter permease -
  KSS95_RS10300 (KSS95_10300) - 2280307..2280948 (-) 642 WP_217853565.1 DUF2062 domain-containing protein -
  KSS95_RS10305 (KSS95_10305) comA 2281092..2283299 (+) 2208 WP_217853566.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS95_RS10310 (KSS95_10310) exbB 2283530..2284165 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS95_RS10315 (KSS95_10315) - 2284162..2284596 (+) 435 WP_217853567.1 biopolymer transporter ExbD -
  KSS95_RS10320 (KSS95_10320) lpxK 2284596..2285606 (+) 1011 WP_217853568.1 tetraacyldisaccharide 4'-kinase -
  KSS95_RS10325 (KSS95_10325) - 2285648..2285833 (+) 186 WP_217853569.1 Trm112 family protein -
  KSS95_RS10330 (KSS95_10330) kdsB 2285830..2286594 (+) 765 WP_217853570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS95_RS10335 (KSS95_10335) - 2286594..2287058 (+) 465 WP_217853571.1 low molecular weight protein-tyrosine-phosphatase -
  KSS95_RS10340 (KSS95_10340) murB 2287055..2288074 (+) 1020 WP_217853572.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=578641 KSS95_RS10310 WP_028690976.1 2283530..2284165(+) (exbB) [Pseudomonas muyukensis strain COW39]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578641 KSS95_RS10310 WP_028690976.1 2283530..2284165(+) (exbB) [Pseudomonas muyukensis strain COW39]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCGCTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCTTCGCGGGTCATCCACGAGCTCGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCTTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTACTGGCCGGCGGTATTTCCAAGGCCCTGGTTACCACCGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGATCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829